Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q3ZE13

- RPP30_DICDI

UniProt

Q3ZE13 - RPP30_DICDI

Protein

Ribonuclease P protein subunit drpp30

Gene

drpp30

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 51 (01 Oct 2014)
      Sequence version 1 (02 May 2006)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.By similarity

    Catalytic activityi

    Endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor.

    GO - Molecular functioni

    1. ribonuclease P activity Source: UniProtKB-EC
    2. RNA binding Source: dictyBase
    3. tRNA binding Source: dictyBase

    GO - Biological processi

    1. RNA phosphodiester bond hydrolysis Source: GOC
    2. RNA phosphodiester bond hydrolysis, endonucleolytic Source: GOC
    3. rRNA processing Source: dictyBase
    4. tRNA processing Source: dictyBase

    Keywords - Molecular functioni

    Hydrolase

    Keywords - Biological processi

    tRNA processing

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease P protein subunit drpp30 (EC:3.1.26.5)
    Alternative name(s):
    RNaseP protein 1
    Gene namesi
    Name:drpp30
    Synonyms:rpp1, rpp30
    ORF Names:DDB_G0269980
    OrganismiDictyostelium discoideum (Slime mold)
    Taxonomic identifieri44689 [NCBI]
    Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyosteliidaDictyostelium
    ProteomesiUP000002195: Chromosome 1, UP000002195: Unassembled WGS sequence

    Organism-specific databases

    dictyBaseiDDB_G0269980. drpp30.

    Subcellular locationi

    Nucleus Curated

    GO - Cellular componenti

    1. nucleolar ribonuclease P complex Source: dictyBase
    2. ribonuclease MRP complex Source: dictyBase

    Keywords - Cellular componenti

    Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 366366Ribonuclease P protein subunit drpp30PRO_0000240431Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi44689.DDB_0232069.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3ZE13.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi285 – 34763Thr-richAdd
    BLAST

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiNOG273171.
    KOiK03539.
    OMAiVICKTMA.
    PhylomeDBiQ3ZE13.

    Family and domain databases

    InterProiIPR016195. Pol/histidinol_Pase-like.
    IPR002738. RNase_P_p30.
    [Graphical view]
    PANTHERiPTHR13031. PTHR13031. 1 hit.
    PfamiPF01876. RNase_P_p30. 1 hit.
    [Graphical view]
    SUPFAMiSSF89550. SSF89550. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    Q3ZE13-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVYYDLNIDS SLPEPKIKSM LSLHTKYGYD SVAITHTVEG KIGYKDVCKI    50
    KKIQIEDDSE KSTSSGWMKM GDSNKTIKQY TRLQVICKTM AEFQMITANN 100
    PVVQSYDIIS VVPYDVSVFN AACNSNEIDI ITIDTFSKFI IKPERVRQCI 150
    AKGIFIEILY GNLFGIDADR IAFFQIASSL VRSSFGKNII LSSSGKSSTT 200
    LRSPYDLSNL GHLFGLTFDQ AKAAVSKHPH TAVLHAITRR TKGIATVTDP 250
    NLLKDLELWK LERKEDTQPT NNNIPHEKHI NKESTGKETI PKPTTTTTTT 300
    TTTTTTAKTK TPTPTPTTEK TPSIPTQPPQ KPTAKSNKKT TTNTTSTAQK 350
    QGKMDIDIDN NKRKRE 366
    Length:366
    Mass (Da):40,745
    Last modified:May 2, 2006 - v1
    Checksum:i7E9B6A63EF8FB09C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY940192 mRNA. Translation: AAY18218.1.
    AAFI02000005 Genomic DNA. Translation: EAL72340.1.
    RefSeqiXP_646444.1. XM_641352.1.

    Genome annotation databases

    EnsemblProtistsiDDB0232069; DDB0232069; DDB_G0269980.
    GeneIDi8617403.
    KEGGiddi:DDB_G0269980.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY940192 mRNA. Translation: AAY18218.1 .
    AAFI02000005 Genomic DNA. Translation: EAL72340.1 .
    RefSeqi XP_646444.1. XM_641352.1.

    3D structure databases

    ProteinModelPortali Q3ZE13.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 44689.DDB_0232069.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi DDB0232069 ; DDB0232069 ; DDB_G0269980 .
    GeneIDi 8617403.
    KEGGi ddi:DDB_G0269980.

    Organism-specific databases

    dictyBasei DDB_G0269980. drpp30.

    Phylogenomic databases

    eggNOGi NOG273171.
    KOi K03539.
    OMAi VICKTMA.
    PhylomeDBi Q3ZE13.

    Miscellaneous databases

    PROi Q3ZE13.

    Family and domain databases

    InterProi IPR016195. Pol/histidinol_Pase-like.
    IPR002738. RNase_P_p30.
    [Graphical view ]
    PANTHERi PTHR13031. PTHR13031. 1 hit.
    Pfami PF01876. RNase_P_p30. 1 hit.
    [Graphical view ]
    SUPFAMi SSF89550. SSF89550. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Cloning and characterization of drpp1."
      Vourekas A., Kalavrizioti D., Zarkadis I.K., Stathopoulos C., Drainas D.
      Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: AX4.
    2. "The genome of the social amoeba Dictyostelium discoideum."
      Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., Lehmann R., Hamlin N.
      , Davies R., Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N., Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N., Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D., Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T., Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A., Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A., Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y., Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C., Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R., Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.
      Nature 435:43-57(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: AX4.

    Entry informationi

    Entry nameiRPP30_DICDI
    AccessioniPrimary (citable) accession number: Q3ZE13
    Secondary accession number(s): Q55CN7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: June 27, 2006
    Last sequence update: May 2, 2006
    Last modified: October 1, 2014
    This is version 51 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Dictyostelium discoideum
      Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3