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Protein

Leucine-rich repeat-containing protein 39

Gene

LRRC39

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 39
Gene namesi
Name:LRRC39
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 3

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 334334Leucine-rich repeat-containing protein 39PRO_0000232579Add
BLAST

Proteomic databases

PaxDbiQ3ZC49.
PRIDEiQ3ZC49.

Interactioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000048641.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati84 – 10522LRR 1Add
BLAST
Repeati107 – 12822LRR 2Add
BLAST
Repeati130 – 15122LRR 3Add
BLAST
Repeati153 – 17624LRR 4Add
BLAST
Repeati177 – 19822LRR 5Add
BLAST
Repeati200 – 22122LRR 6Add
BLAST
Repeati223 – 24422LRR 7Add
BLAST
Repeati246 – 26722LRR 8Add
BLAST
Repeati269 – 29022LRR 9Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili10 – 4738Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi293 – 2997Poly-Glu

Sequence similaritiesi

Contains 9 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Coiled coil, Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129686.
HOGENOMiHOG000065739.
HOVERGENiHBG101376.
InParanoidiQ3ZC49.
OMAiAYIQESR.
OrthoDBiEOG7DVDB3.
TreeFamiTF333627.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 6 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 7 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3ZC49-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSENVVSTGA VNAVKEVWEK RIKKLNEDLK REKEFQQKLV RIWEERVCLT
60 70 80 90 100
KLREKVTKED GRVILKIEKE EWKTLPSSLL KLNQLQEWQL HRIGLLKIPE
110 120 130 140 150
FIGRFQNLIV LDLSRNTITE IPRGIGLLTR LQELILSYNR IKTVPMELSY
160 170 180 190 200
CASLEKLELA VNRDISDLPQ ELSNLLKLTH LDLSMNLFTT IPPAVLNMPA
210 220 230 240 250
LEWLDMGSNR LEQLPDTIER MQNLHTLWLQ RNEITCLPET ISSMKNLSTL
260 270 280 290 300
VLSNNKLQDI PVCMEKMTNL RFVNFRDNPL KLEVTLPPSE NIEEEEEREL
310 320 330
FGLQFMHTYI QESRRAGNQV NCSTTSPNSI DADG
Length:334
Mass (Da):38,787
Last modified:September 27, 2005 - v1
Checksum:i66BA286F1415AD13
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC102917 mRNA. Translation: AAI02918.1.
RefSeqiNP_001069893.1. NM_001076425.1.
UniGeneiBt.49463.

Genome annotation databases

EnsembliENSBTAT00000053822; ENSBTAP00000048641; ENSBTAG00000015786.
GeneIDi616488.
KEGGibta:616488.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC102917 mRNA. Translation: AAI02918.1.
RefSeqiNP_001069893.1. NM_001076425.1.
UniGeneiBt.49463.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000048641.

Proteomic databases

PaxDbiQ3ZC49.
PRIDEiQ3ZC49.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000053822; ENSBTAP00000048641; ENSBTAG00000015786.
GeneIDi616488.
KEGGibta:616488.

Organism-specific databases

CTDi127495.

Phylogenomic databases

eggNOGiKOG0619. Eukaryota.
COG4886. LUCA.
GeneTreeiENSGT00840000129686.
HOGENOMiHOG000065739.
HOVERGENiHBG101376.
InParanoidiQ3ZC49.
OMAiAYIQESR.
OrthoDBiEOG7DVDB3.
TreeFamiTF333627.

Miscellaneous databases

NextBioi20900155.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 2 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 6 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 7 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Mammalian Gene Collection (MGC) project
    Submitted (AUG-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: Hereford.
    Tissue: Rumen.

Entry informationi

Entry nameiLRC39_BOVIN
AccessioniPrimary (citable) accession number: Q3ZC49
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 18, 2006
Last sequence update: September 27, 2005
Last modified: May 11, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.