Reviewed, UniProtKB/Swiss-Prot Q3YV72 (RHAB_SHISS)

Names and origin

Protein names

Recommended name:
    Rhamnulokinase
    EC=2.7.1.5
Alternative name(s):
    Rhamnulose kinase

Gene names

Name:	rhaB
Ordered Locus Names:	SSON_4074

Organism

Shigella sonnei (strain Ss046) [Complete proteome] [HAMAP]

Taxonomic identifier

300269 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Shigella

Protein attributes

Sequence length	489 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	ATP + L-rhamnulose = ADP + L-rhamnulose 1-phosphate. HAMAP MF_01535
Pathway	Carbohydrate degradation; L-rhamnose degradation; glycerone phosphate from L-rhamnose: step 2/3. HAMAP MF_01535
Sequence similarities	Belongs to the rhamnulokinase family.

Ontologies

Keywords
Biological process	Rhamnose metabolism
Ligand	ATP-binding Nucleotide-binding
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	rhamnose catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW rhamnulokinase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 489	489	Rhamnulokinase HAMAP MF_01535		PRO_0000297524
Regions
	Region	236 – 238	3	Substrate binding By similarity
Sites
	Binding site	14	1	ATP By similarity
	Binding site	259	1	ATP By similarity
	Binding site	296	1	Substrate By similarity
	Binding site	304	1	ATP By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q3YV72-1 [UniParc]. Last modified September 27, 2005. Version 1. Checksum: DE40F471DC7BD50B	FASTA	489	54,066
	10 20 30 40 50 60 MTFRNCVAVD LGASSGRVML ARYERECRSL TLREIHRFNN GLHSQNGYVT WNVDSLESAI 70 80 90 100 110 120 RLGLNKVCEE GIRIDSIGID TWGVDFVLLD QQGQRVGLPV AYRDSRSNGL MAQAQQQLGK 130 140 150 160 170 180 RDIYQRSGIQ FLPFNTLYQL RALTEQQPEL IPHIAHALLM PDYFSYRLTG KMNWEYTNAT 190 200 210 220 230 240 TTQLVNINSD DWDESLLAWS GANKAWFGRP THPGNVIGHW ICPQGNEIPV VAVASHDTAS 250 260 270 280 290 300 AVIASPLNGS RAAYLSSGTW SLMGFESQTP FTNDTALAAN ITNEGGAEGR YRVLKNIMGL 310 320 330 340 350 360 WLLQRVLQER QINDLPALIA ATQALPACRF IINPNDDRFI NPEAMCSEIQ AACREMAQPL 370 380 390 400 410 420 PESDAELARC IFDSLALLYA DVLHELAQLR GEDFSQLHIV GGGCQNTLLN QLCADACGIR 430 440 450 460 470 480 VIAGPVEAST LGNIGIQLMT LDELNNVDDF RQVVSTTANL TTFTPNPDSE IAHYVAQLHS TRQTKELCA

References

[1]

"Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery." Yang F., Yang J., Zhang X., Chen L., Jiang Y., Yan Y., Tang X., Wang J., Xiong Z., Dong J., Xue Y., Zhu Y., Xu X., Sun L., Chen S., Nie H., Peng J., Xu J. , Wang Y., Yuan Z., Wen Y., Yao Z., Shen Y., Qiang B., Hou Y., Yu J., Jin Q. Nucleic Acids Res. 33:6445-6458(2005) [PubMed: 16275786] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000038 Genomic DNA. Translation: AAZ90590.1.
RefSeq	YP_312825.1.
3D structure databases
SMR	Q3YV72. Positions 2-480.
ModBase	Search...
Genome annotation databases
GeneID	3669301.
GenomeReviews	Gene locus SSON_4074 in contig CP000038_GR.
KEGG	ssn:SSON_4074.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q3YV72.
OMA	Q3YV72. EIHRFKN.
Enzyme and pathway databases
BioCyc	SSON300269:SSO_4074-MON.
Family and domain databases
HAMAP	MF_01535. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018484. Carb_kinase_FGGY_N. IPR013449. Rhamnulokinase. [Graphical view]
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR02627. rhamnulo_kin. 1 hit.
ProtoNet	Search...

Entry information

Entry name

RHAB_SHISS

Accession

Primary (citable) accession number: Q3YV72

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 21, 2007
Last sequence update:	September 27, 2005
Last modified:	June 16, 2009
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)