Reviewed, UniProtKB/Swiss-Prot Q3YUK4 (DSBD_SHISS)

Names and origin

Protein names

Recommended name:
    Thiol:disulfide interchange protein dsbD
    EC=1.8.1.8
Alternative name(s):
    Protein-disulfide reductase
      Short name=Disulfide reductase

Gene names

Name:	dsbD
Ordered Locus Names:	SSON_4319

Organism

Shigella sonnei (strain Ss046) [Complete proteome] [HAMAP]

Taxonomic identifier

300269 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Shigella

Protein attributes

Sequence length	565 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps By similarity.
Catalytic activity	Protein dithiol + NAD(P)+ = protein disulfide + NAD(P)H. HAMAP MF_00399
Subcellular location	Cell inner membrane; Multi-pass membrane protein By similarity.
Sequence similarities	Belongs to the thioredoxin family. DsbD subfamily. Contains 1 thioredoxin domain.

Ontologies

Keywords
Biological process	Cytochrome c-type biogenesis Electron transport Transport
Cellular component	Cell inner membrane Cell membrane Membrane
Domain	Redox-active center Signal Transmembrane
Ligand	NAD
Molecular function	Oxidoreductase
PTM	Disulfide bond
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell redox homeostasis Inferred from electronic annotation. Source: InterPro cytochrome complex assembly Inferred from electronic annotation. Source: HAMAP electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	electron carrier activity Inferred from electronic annotation. Source: HAMAP protein-disulfide reductase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 19	19	Potential
	Chain	20 – 565	546	Thiol:disulfide interchange protein dsbD HAMAP MF_00399		PRO_0000304399
Regions
	Transmembrane	163 – 183	21	Potential
	Transmembrane	208 – 228	21	Potential
	Transmembrane	243 – 263	21	Potential
	Transmembrane	296 – 316	21	Potential
	Transmembrane	323 – 343	21	Potential
	Transmembrane	365 – 385	21	Potential
	Transmembrane	386 – 406	21	Potential
	Domain	434 – 565	132	Thioredoxin
Amino acid modifications
	Disulfide bond	122 ↔ 128		Redox-active By similarity
	Disulfide bond	182 ↔ 304		Redox-active By similarity
	Disulfide bond	480 ↔ 483		Redox-active By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q3YUK4-1 [UniParc]. Last modified September 27, 2005. Version 1. Checksum: D7A293C0E6B8F872	FASTA	565	61,858
	10 20 30 40 50 60 MAQRIFTLIL LLCSTSVFAG LFDAPGRSHF VPADQAFAFD FQQNQHDLNL TWQIKDGYYL 70 80 90 100 110 120 YRKQIRITPE HAKIADVQLP QGVWHEDEFY GKSEIYRDRL TLPVTINQAS AGATLTVTYQ 130 140 150 160 170 180 GCADAGFCYP PETKTVPLSE VVANNAASQP VSVPQQEQHT AQLPFSALWA LLIGIGIAFT 190 200 210 220 230 240 PCVLPMYPLI SGIVLGGKQR LSTARALLLT FIYVQGMALT YTALGLVVAA AGLQFQAALQ 250 260 270 280 290 300 HPYVLIGLAI VFTLLAMSMF GLFTLQLPSS LQTHLTLMSN RQQGGSPGGV FVMGAIAGLI 310 320 330 340 350 360 CSPCTTAPLS AILLYIAQSG NMWLGGGMLY LYALGMGLPL MLITVFGNRL LPKSGPWMEQ 370 380 390 400 410 420 VKTAFGFVIL ALPIFLLERV IGDIWGLRLW SALGVAFFGW AFITSLQAKR GWMRVVQIIL 430 440 450 460 470 480 LAAALVSVRP LQDWAFGATH TAQTQTHLNF TQIKTVDELN QALVEAKGKP VMLDLYADWC 490 500 510 520 530 540 VACKKFEKYT FSDPQVQKAL ADTVLLQANV TANDAQDVAL LKHLNVLGLP TILFFDGQGQ 550 560 EHPQARVTGF MDAETFSAHL RDRQP

References

[1]

"Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery." Yang F., Yang J., Zhang X., Chen L., Jiang Y., Yan Y., Tang X., Wang J., Xiong Z., Dong J., Xue Y., Zhu Y., Xu X., Sun L., Chen S., Nie H., Peng J., Xu J. , Wang Y., Yuan Z., Wen Y., Yao Z., Shen Y., Qiang B., Hou Y., Yu J., Jin Q. Nucleic Acids Res. 33:6445-6458(2005) [PubMed: 16275786] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	CP000038 Genomic DNA. Translation: AAZ90808.1.
RefSeq	YP_313043.1.
3D structure databases
SMR	Q3YUK4. Positions 23-143, 442-565.
ModBase	Search...
Genome annotation databases
GeneID	3668622.
GenomeReviews	Gene locus SSON_4319 in contig CP000038_GR.
KEGG	ssn:SSON_4319.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q3YUK4.
OMA	Q3YUK4. TITHILW.
Enzyme and pathway databases
BioCyc	SSON300269:SSO_4319-MON.
Family and domain databases
HAMAP	MF_00399. [Tree]
InterPro	IPR003834. Cyt_c_assmbl_TM. IPR017936. Thioredoxin-like. IPR017937. Thioredoxin_CS. IPR013766. Thioredoxin_domain. IPR012335. Thioredoxin_fold. [Graphical view]
Gene3D	G3DSA:3.40.30.10. Thioredoxin_fold. 1 hit.
Pfam	PF02683. DsbD. 1 hit. PF00085. Thioredoxin. 1 hit. [Graphical view]
PROSITE	PS00194. THIOREDOXIN_1. 1 hit. PS51352. THIOREDOXIN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

DSBD_SHISS

Accession

Primary (citable) accession number: Q3YUK4

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 11, 2007
Last sequence update:	September 27, 2005
Last modified:	June 16, 2009
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)