Q3YU08 (LPLA_SHISS) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Lipoate-protein ligase A
EC=2.7.7.63

Alternative name(s):
Lipoate--protein ligase

Gene names

Name:	lplA
Ordered Locus Names:	SSON_4536

Organism

Shigella sonnei (strain Ss046) [Complete proteome] [HAMAP]

Taxonomic identifier

300269 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Shigella

Protein attributes

Sequence length	338 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Catalyzes both the ATP-dependent activation of exogenously supplied lipoate to lipoyl-AMP and the transfer of the activated lipoyl onto the lipoyl domains of lipoate-dependent enzymes By similarity. HAMAP MF_01602
Catalytic activity	ATP + lipoate = diphosphate + lipoyl-AMP. HAMAP MF_01602 Lipoyl-AMP + protein = protein N(6)-(lipoyl)lysine + AMP. HAMAP MF_01602
Pathway	Protein modification; protein lipoylation via exogenous pathway; protein N(6)-(lipoyl)lysine from lipoate: step 1/2. HAMAP MF_01602 Protein modification; protein lipoylation via exogenous pathway; protein N(6)-(lipoyl)lysine from lipoate: step 2/2.
Subunit structure	Monomer By similarity. HAMAP MF_01602
Subcellular location	Cytoplasm By similarity HAMAP MF_01602.
Miscellaneous	In the transfer reaction, the free carboxyl group of lipoic acid is attached via an amide linkage to the epsilon-amino group of a specific lysine residue of lipoyl domains of lipoate-dependent enzymes By similarity. HAMAP MF_01602
Sequence similarities	Belongs to the lplA family.

Ontologies

Keywords
Cellular component	Cytoplasm
Ligand	ATP-binding Nucleotide-binding
Molecular function	Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	peptidyl-lysine lipoylation Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW lipoate-protein ligase activity Inferred from electronic annotation. Source: InterPro transferase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 338	338	Lipoate-protein ligase A HAMAP MF_01602		PRO_1000069390
Regions
	Nucleotide binding	76 – 79	4	ATP By similarity
Sites
	Binding site	71	1	ATP By similarity
	Binding site	134	1	ATP By similarity
	Binding site	134	1	Lipoate By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q3YU08 [UniParc]. Last modified September 27, 2005. Version 1. Checksum: FE230928FD55523E	FASTA	338	37,910
	10 20 30 40 50 60 MSTLRLLISD SYDPWFNLAV EECIFRQMPA TQRVLFLWRN ADTVVIGRAQ NPWKECNTRR 70 80 90 100 110 120 MEEDNVRLAR RSSGGGAVFH DLGNTCFTFM AGKPEYDKTI STSIVLNALN ALGVSAEASG 130 140 150 160 170 180 RNDLVVKTVE GDRKVSGSAY RETKDRGFHH GTLLLNADLS RLANYLNPDK KKLAAKGITS 190 200 210 220 230 240 VRSRVTNLTE LLPGITHEQV CEAITKAFFA HYGERVEAEI ISPDKTPDLP NFAETFARQS 250 260 270 280 290 300 SWEWNFGQAP AFSHLLDERF SWGGVELHFD VEKGHITRAQ VFTDSLNPAP LEALAGRLQG 310 320 330 CLYRADMLQQ ECEALLVDFP DQEKELRELS TWIAGAVR

References

[1]

"Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery." Yang F., Yang J., Zhang X., Chen L., Jiang Y., Yan Y., Tang X., Wang J., Xiong Z., Dong J., Xue Y., Zhu Y., Xu X., Sun L., Chen S., Nie H., Peng J., Xu J. , Wang Y., Yuan Z., Wen Y., Yao Z., Shen Y., Qiang B., Hou Y., Yu J., Jin Q. Nucleic Acids Res. 33:6445-6458(2005) [PubMed: 16275786] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Ss046.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000038 Genomic DNA. Translation: AAZ91004.1.
RefSeq	YP_313239.1. NC_007384.1.
3D structure databases
HSSP	HSSP built from PDB template 1X2G based on UniProtKB P32099.
ProteinModelPortal	Q3YU08.
SMR	Q3YU08. Positions 2-338.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3YU08.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBESCT00000102153; EBESCP00000098182; EBESCG00000101197.
GeneID	3668069.
GenomeReviews	Gene locus SSON_4536 in contig CP000038_GR.
KEGG	ssn:SSON_4536.
PATRIC	18744262. VBIShiSon107113_5382.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0095.
GeneTree	EBGT00050000010598.
HOGENOM	HBG715377.
OMA	YDRMENL.
PhylomeDB	Q3YU08.
ProtClustDB	PRK03822.
Enzyme and pathway databases
BioCyc	SSON300269:SSO_4536-MONOMER.
Family and domain databases
HAMAP	MF_01602. LplA. [Tree]
InterPro	IPR004143. BPL_LipA_LipB. IPR005107. CO_DH_flav_C. IPR023741. Lipoate_ligase_A. IPR019491. Lipoate_protein_ligase_C. IPR004562. LipoylTrfase_LipoateP_Ligase. [Graphical view]
Gene3D	G3DSA:3.30.390.50. CO_DH_flav_C. 1 hit.
KO	K03800.
Pfam	PF03099. BPL_LplA_LipB. 1 hit. PF10437. Lip_prot_lig_C. 1 hit. [Graphical view]
TIGRFAMs	TIGR00545. Lipoyltrans. 1 hit.
ProtoNet	Search...

Entry information

Entry name

LPLA_SHISS

Accession

Primary (citable) accession number: Q3YU08

Entry history

Integrated into UniProtKB/Swiss-Prot:	February 5, 2008
Last sequence update:	September 27, 2005
Last modified:	January 25, 2012
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program