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Q3V3N7 (Q3V3N7_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length593 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processGolgi to plasma membrane protein transport

Inferred from sequence orthology PubMed 19150989. Source: MGI

adult behavior

Inferred from mutant phenotype PubMed 18032602. Source: MGI

brain morphogenesis

Inferred from mutant phenotype PubMed 18032602. Source: MGI

cartilage development

Inferred from mutant phenotype PubMed 19195025. Source: MGI

cellular lipid metabolic process

Inferred from mutant phenotype PubMed 18032602. Source: MGI

cerebral cortex development

Inferred from mutant phenotype PubMed 18032602. Source: MGI

cilium assembly

Inferred from mutant phenotype PubMed 18299575. Source: BHF-UCL

cilium morphogenesis

Inferred from mutant phenotype PubMed 18299575. Source: BHF-UCL

dendrite development

Inferred from mutant phenotype PubMed 15322545. Source: MGI

fat cell differentiation

Inferred from expression pattern PubMed 17379567. Source: BHF-UCL

fertilization

Inferred from mutant phenotype PubMed 18032602. Source: MGI

hippocampus development

Inferred from mutant phenotype PubMed 18032602. Source: MGI

hormone metabolic process

Inferred from mutant phenotype PubMed 18032602. Source: MGI

intraciliary retrograde transport

Inferred from sequence orthology PubMed 22922713. Source: MGI

microtubule cytoskeleton organization

Inferred from mutant phenotype PubMed 15322545. Source: MGI

multicellular organism growth

Inferred from mutant phenotype PubMed 18032602. Source: MGI

neuron migration

Inferred from mutant phenotype PubMed 21471969. Source: MGI

nonmotile primary cilium assembly

Inferred from mutant phenotype PubMed 15322545PubMed 16170314. Source: MGI

olfactory behavior

Inferred from mutant phenotype PubMed 18032602. Source: MGI

photoreceptor cell morphogenesis

Inferred from mutant phenotype PubMed 18032602. Source: MGI

protein localization

Inferred from mutant phenotype PubMed 22228099. Source: MGI

protein localization to cilium

Inferred from sequence orthology PubMed 22922713. Source: MGI

regulation of cilium beat frequency involved in ciliary motility

Inferred from mutant phenotype PubMed 18299575. Source: BHF-UCL

retina homeostasis

Inferred from mutant phenotype PubMed 15322545. Source: MGI

sensory perception of smell

Inferred from mutant phenotype PubMed 15322545. Source: MGI

striatum development

Inferred from mutant phenotype PubMed 18032602. Source: MGI

   Cellular_componentBBSome

Inferred from direct assay PubMed 20080638PubMed 22500027. Source: MGI

centrosome

Inferred from direct assay PubMed 21471969. Source: MGI

ciliary basal body

Inferred from sequence orthology PubMed 22922713. Source: MGI

motile cilium

Inferred from mutant phenotype PubMed 18299575. Source: BHF-UCL

   Molecular_functionphosphoprotein binding

Inferred from physical interaction PubMed 21471969. Source: MGI

receptor binding

Inferred from physical interaction PubMed 19150989. Source: BHF-UCL

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q3V3N7 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 322E9DD4DD554813

FASTA59365,094
        10         20         30         40         50         60 
MAAASSSDSD SGRAESNEAN SKWLDAHYDP MANIHTFSSC LSLADLHGDG EYKLVVGDLG 

        70         80         90        100        110        120 
PGGQQPRLKV LKGPTVLTES PLPALPASAA TFLMDQHEPR TPALALASGP CVYVYKNLRP 

       130        140        150        160        170        180 
YFKFSLPQLP PNPLEQDVWN QAKEDQIDPL TLKEMLEDIR EKADVPLSVQ SLRFLQLELS 

       190        200        210        220        230        240 
EMEAFVNQHK SKVIKRQTVI TTMTTLKKNL ADEDAASCLV LGTESKELLV LDPEAFTILA 

       250        260        270        280        290        300 
KMSLPSVPVF LEVSGQFDVE FRLTAACRNG SIYILRRDSK HPKYCIELSA QPVGLVRVHK 

       310        320        330        340        350        360 
VLVVGSTQES LHGFTHKGKK LWTVQMPAAI LTMNLLEQRS RGLQAVMAAL ANGEVRIYRD 

       370        380        390        400        410        420 
KALLNVIHAP DAVTSLCFGR YGREDNTLIM TTRGGGLIIK ILKRTAVFVE GTGEVGPPLA 

       430        440        450        460        470        480 
QTTKLSVPRK TRLYVDQTLR EREAGTAMHR TFQTDLYLLR LRAARAYVQA LESSLSPMST 

       490        500        510        520        530        540 
TAREPLKLHA VVQGLGPTFK LTLHLQNTST ARPVLGLHVC FLYNKALYAL PQAFFKVPLL 

       550        560        570        580        590 
VPGLSYPLET FVESLSSKGI SDMIKVLVLR EGQSAPLLSA HINMPVSEGL AAA 

« Hide

References

« Hide 'large scale' references
[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[5]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE20519.1.
Tissue: Thymus EMBL BAE20519.1.
[9]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000055321.
[10]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000055321.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC141437 Genomic DNA. No translation available.
AK037753 mRNA. Translation: BAE20519.1.
RefSeqNP_001028300.1. NM_001033128.3.
UniGeneMm.23636.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000053506; ENSMUSP00000055321; ENSMUSG00000006464.
GeneID52028.
KEGGmmu:52028.
UCSCuc008gbk.2. mouse.

Organism-specific databases

CTD582.
MGIMGI:1277215. Bbs1.

Phylogenomic databases

GeneTreeENSGT00390000005232.
HOGENOMHOG000260890.
HOVERGENHBG045407.
InParanoidQ3V3N7.
KOK16746.
OMALTAHINM.
OrthoDBEOG75XGKF.
TreeFamTF312892.

Gene expression databases

GenevestigatorQ3V3N7.

Family and domain databases

InterProIPR028784. BBS1.
IPR011047. Quinonprotein_ADH-like_supfam.
[Graphical view]
PANTHERPTHR20870:SF0. PTHR20870:SF0. 1 hit.
SUPFAMSSF50998. SSF50998. 1 hit.
ProtoNetSearch...

Other

NextBio308396.
PROQ3V3N7.
SOURCESearch...

Entry information

Entry nameQ3V3N7_MOUSE
AccessionPrimary (citable) accession number: Q3V3N7
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 16, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)