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Protein
Submitted name:

Putative uncharacterized protein

Gene

Trp53bp1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Trp53bp1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1351320. Trp53bp1.

PTM / Processingi

Proteomic databases

PaxDbiQ3V1P7.
PeptideAtlasiQ3V1P7.

Expressioni

Gene expression databases

BgeeiQ3V1P7.
GenevisibleiQ3V1P7. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000106278.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini497 – 56569BRCTInterPro annotationAdd
BLAST
Domaini581 – 681101BRCTInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3548. Eukaryota.
ENOG411075K. LUCA.
HOVERGENiHBG101928.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR015125. 53-BP1_Tudor.
IPR001357. BRCT_dom.
IPR014722. Rib_L2_dom2.
[Graphical view]
PfamiPF09038. 53-BP1_Tudor. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3V1P7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ETEVSPSQTG GSSGDLGDIS SFSSKASSSH HTSSGTSLSA IHSSGSSGRG
60 70 80 90 100
AGPLKGKASG TEAADFALPS SRGGPGKLSP RKGISQTGAP VCEEDGDAGL
110 120 130 140 150
GIRQGGKAPV TPRGRGRRGR PPSRTTGTRE TVVSGPLGVE DISPSMSPDD
160 170 180 190 200
KSFTRIMPRV PDSTKRTDAS SSTLRRSDSP EIPFQAATGS SDGLDSSSSG
210 220 230 240 250
NSFVGLRVVA KWSSNGYFYS GKITRDVGAG KYKLLFDDGY ECDVLGKDIL
260 270 280 290 300
LCDPIPLDTE VTALSEDEYF SAGVVKGHRK ESGELYYSIE KEGQRKWYKR
310 320 330 340 350
MAVILSLEQG NRLREQYGLG PYEAVTPLTK AADISLDNLV EGKRKRRSNI
360 370 380 390 400
SSPVTPTAAS SSSTTPTRKA TESPRASTGV PSGKRKLPTS EEERSPAKRG
410 420 430 440 450
RKSATVKPGT VGAAEFVSPC ETGDNIGEPS VLEEPRGPLP LNKTLFLGYA
460 470 480 490 500
FLLTMATTSD KLASRSKLLD GPTGSSEEEE EFLEIPPFNK QYTECQLRAG
510 520 530 540 550
AGYILEDFNE AQCNTAYQCL LIADQHCRTR KYFLCLASGI PCVSHVWVHD
560 570 580 590 600
SCHANQLQNY RNYLLPAGYS LEEQRILDWQ PRENPFQNLK VLLVSDQQQN
610 620 630 640 650
FLELWSEILM TGGAASVKQH HSSAHNKDIA LGVFDVVVTD PSCPASVLKC
660 670 680
AEALQLPVVS QEWVIQCLIV GERIGFKQHP KYKHDYVSH
Length:689
Mass (Da):74,266
Last modified:October 11, 2005 - v1
Checksum:iD37BB7DB82A7967B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK132323 mRNA. Translation: BAE21103.1.
RefSeqiNP_001277759.1. NM_001290830.1.
NP_038763.3. NM_013735.4.
UniGeneiMm.215389.
Mm.383499.
Mm.481841.

Genome annotation databases

GeneIDi27223.
KEGGimmu:27223.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK132323 mRNA. Translation: BAE21103.1.
RefSeqiNP_001277759.1. NM_001290830.1.
NP_038763.3. NM_013735.4.
UniGeneiMm.215389.
Mm.383499.
Mm.481841.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000106278.

Proteomic databases

PaxDbiQ3V1P7.
PeptideAtlasiQ3V1P7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi27223.
KEGGimmu:27223.

Organism-specific databases

CTDi27223.
MGIiMGI:1351320. Trp53bp1.

Phylogenomic databases

eggNOGiKOG3548. Eukaryota.
ENOG411075K. LUCA.
HOVERGENiHBG101928.

Miscellaneous databases

ChiTaRSiTrp53bp1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ3V1P7.
GenevisibleiQ3V1P7. MM.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR015125. 53-BP1_Tudor.
IPR001357. BRCT_dom.
IPR014722. Rib_L2_dom2.
[Graphical view]
PfamiPF09038. 53-BP1_Tudor. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF52113. SSF52113. 2 hits.
PROSITEiPS50172. BRCT. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.

Entry informationi

Entry nameiQ3V1P7_MOUSE
AccessioniPrimary (citable) accession number: Q3V1P7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: July 6, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.