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Protein
Submitted name:

Putative uncharacterized protein

Gene

Lmnb2

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Lmnb2Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:96796. Lmnb2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Intermediate filamentUniRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

MaxQBiQ3V159.
PaxDbiQ3V159.
PRIDEiQ3V159.

Expressioni

Gene expression databases

BgeeiQ3V159.
ExpressionAtlasiQ3V159. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000136524.

Structurei

3D structure databases

ProteinModelPortaliQ3V159.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini323 – 427105LTDInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili156 – 23378Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the intermediate filament family.UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiKOG0977. Eukaryota.
ENOG410Y2H6. LUCA.
GeneTreeiENSGT00830000128282.
HOVERGENiHBG013015.

Family and domain databases

Gene3Di2.60.40.1260. 1 hit.
InterProiIPR001664. IF.
IPR018039. Intermediate_filament_CS.
IPR027696. Lamin_B.
IPR001322. Lamin_tail_dom.
[Graphical view]
PANTHERiPTHR23239. PTHR23239. 1 hit.
PTHR23239:SF152. PTHR23239:SF152. 1 hit.
PfamiPF00038. Filament. 1 hit.
PF00932. LTD. 1 hit.
[Graphical view]
SMARTiSM01391. Filament. 1 hit.
[Graphical view]
SUPFAMiSSF74853. SSF74853. 1 hit.
PROSITEiPS00226. IF. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3V159-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGESESMRGT GEGCGRDCPE AARPLMETVE GALPELRGRP LREYVKRRPR
60 70 80 90 100
GLGKTPVEDP VKSEGAVGYP RTWNNHLRVP TREQEVRETR RRHERRLVEV
110 120 130 140 150
DSSRQQEYDF KMAQALEDLR SQHDEQVRLY RVELEQTYQA KLDNAKLLSD
160 170 180 190 200
QNDKAAHAAR EELKEARMRV ESLSYQLLGL QKQASAAENH IHELEEALAG
210 220 230 240 250
ERDKFRKMLD AKEQEMTEVR DAMQQQLAEY QELLDIKLAL DMEISAYRKL
260 270 280 290 300
LEGEEERLKL SPSPSSRITI SRATSSSSSS SGVGMSVGQG RGKRRRLETE
310 320 330 340 350
DTSGSPSRAS RVSSGSRLAQ QTVATGVVNI DEVDPEGRFV RLKNSSDKDQ
360 370 380 390 400
SLGNWRIKRQ VLEGEDIAYK FTPKYVLRAG QTVTVWAAGA GATHSPPSTL
410 420 430 440 450
VWKSQTNWGP GESFRTALVS ADGEEVAVKA AKHSSVQGRE NGEEEEEEEA
460 470
EFGEEDLFHQ QGDPRTTSRG CRLM
Length:474
Mass (Da):53,268
Last modified:October 11, 2005 - v1
Checksum:i9303CBEC3C77DE75
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK132671 mRNA. Translation: BAE21293.1.
RefSeqiXP_006513341.1. XM_006513278.2.
UniGeneiMm.7362.

Genome annotation databases

GeneIDi16907.
UCSCiuc007gfj.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK132671 mRNA. Translation: BAE21293.1.
RefSeqiXP_006513341.1. XM_006513278.2.
UniGeneiMm.7362.

3D structure databases

ProteinModelPortaliQ3V159.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000136524.

Proteomic databases

MaxQBiQ3V159.
PaxDbiQ3V159.
PRIDEiQ3V159.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi16907.
UCSCiuc007gfj.1. mouse.

Organism-specific databases

CTDi84823.
MGIiMGI:96796. Lmnb2.

Phylogenomic databases

eggNOGiKOG0977. Eukaryota.
ENOG410Y2H6. LUCA.
GeneTreeiENSGT00830000128282.
HOVERGENiHBG013015.

Miscellaneous databases

ChiTaRSiLmnb2. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ3V159.
ExpressionAtlasiQ3V159. baseline and differential.

Family and domain databases

Gene3Di2.60.40.1260. 1 hit.
InterProiIPR001664. IF.
IPR018039. Intermediate_filament_CS.
IPR027696. Lamin_B.
IPR001322. Lamin_tail_dom.
[Graphical view]
PANTHERiPTHR23239. PTHR23239. 1 hit.
PTHR23239:SF152. PTHR23239:SF152. 1 hit.
PfamiPF00038. Filament. 1 hit.
PF00932. LTD. 1 hit.
[Graphical view]
SMARTiSM01391. Filament. 1 hit.
[Graphical view]
SUPFAMiSSF74853. SSF74853. 1 hit.
PROSITEiPS00226. IF. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: TestisImported.

Entry informationi

Entry nameiQ3V159_MOUSE
AccessioniPrimary (citable) accession number: Q3V159
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: May 11, 2016
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.