Q3V0C5 (UBP48_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 68.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Ubiquitin carboxyl-terminal hydrolase 48 EC=3.4.19.12 Alternative name(s): Deubiquitinating enzyme 48 Ubiquitin thioesterase 48 Ubiquitin-specific-processing protease 48 | ||||
| Gene names |
| ||||
| Organism | Mus musculus (Mouse) [Reference proteome] | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus![]() |
Protein attributes
| Sequence length | 1052 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. May be involved in the regulation of NF-kappa-B activation by TNF receptor superfamily via its interactions with RELA and TRAF2. May also play a regulatory role at postsynaptic sites By similarity. |
| Catalytic activity | Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal). |
| Subunit structure | Interacts with TRAF2 and RELA By similarity. |
| Subcellular location | |
| Sequence similarities | Belongs to the peptidase C19 family. Contains 3 DUSP domains. Contains 1 ubiquitin-like domain. |
| Sequence caution | The sequence AAH21769.1 differs from that shown. Reason: Frameshift at position 377. The sequence BAD90375.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ubl conjugation pathway |
| Cellular component | Cytoplasm Nucleus |
| Coding sequence diversity | Alternative splicing |
| Domain | Repeat |
| Molecular function | Hydrolase Protease Thiol protease |
| PTM | Acetylation Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | ubiquitin-dependent protein catabolic process Inferred from electronic annotation. Source: InterPro |
| Cellular_component | mitochondrion Inferred from electronic annotation. Source: Compara nucleusInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | cysteine-type peptidase activity Inferred from electronic annotation. Source: UniProtKB-KW ubiquitin thiolesterase activityInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 5 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q3V0C5-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q3V0C5-2) The sequence of this isoform differs from the canonical sequence as follows: 1-1: M → MVGPCPFGRRRRRRRRPPGSASATSVKAM | ||||||
| Note: No experimental confirmation available. | ||||||
| Isoform 3 (identifier: Q3V0C5-3) The sequence of this isoform differs from the canonical sequence as follows: 390-390: L → LA 483-484: EP → GL 485-1052: Missing. | ||||||
| Isoform 4 (identifier: Q3V0C5-4) The sequence of this isoform differs from the canonical sequence as follows: 483-484: EP → GL 485-1052: Missing. | ||||||
| Isoform 5 (identifier: Q3V0C5-5) The sequence of this isoform differs from the canonical sequence as follows: 390-390: L → LA |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1052 | 1052 | Ubiquitin carboxyl-terminal hydrolase 48 | PRO_0000249524 | |||||
Regions | |||||||||
| Domain | 459 – 553 | 95 | DUSP 1 | ||||||
| Domain | 568 – 691 | 124 | DUSP 2 | ||||||
| Domain | 710 – 841 | 132 | DUSP 3 | ||||||
| Domain | 946 – 1026 | 81 | Ubiquitin-like | ||||||
Sites | |||||||||
| Active site | 98 | 1 | Nucleophile By similarity | ||||||
| Active site | 353 | 1 | Proton acceptor By similarity | ||||||
Amino acid modifications | |||||||||
| Modified residue | 903 | 1 | Phosphoserine By similarity | ||||||
| Modified residue | 904 | 1 | Phosphoserine Ref.4 | ||||||
| Modified residue | 905 | 1 | Phosphoserine Ref.4 | ||||||
| Modified residue | 973 | 1 | N6-acetyllysine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 | 1 | M → MVGPCPFGRRRRRRRRPPGS ASATSVKAM in isoform 2. | VSP_020482 | |||||
| Alternative sequence | 390 | 1 | L → LA in isoform 3 and isoform 5. | VSP_020483 | |||||
| Alternative sequence | 483 – 484 | 2 | EP → GL in isoform 3 and isoform 4. | VSP_020484 | |||||
| Alternative sequence | 485 – 1052 | 568 | Missing in isoform 3 and isoform 4. | VSP_020485 | |||||
Sequences
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References
| [1] | "Prediction of the coding sequences of mouse homologues of KIAA gene. The complete nucleotide sequences of mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries." Okazaki N., Kikuno R.F., Ohara R., Inamoto S., Koseki H., Hiraoka S., Saga Y., Nagase T., Ohara O., Koga H. Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). Tissue: Embryonic tail. |
| [2] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). Strain: C57BL/6J. Tissue: Lung and Testis. |
| [3] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-633 (ISOFORM 5). Strain: FVB/N. Tissue: Mammary tumor. |
| [4] | "Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry." Zanivan S., Gnad F., Wickstroem S.A., Geiger T., Macek B., Cox J., Faessler R., Mann M. J. Proteome Res. 7:5314-5326(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-904 AND SER-905, MASS SPECTROMETRY. Tissue: Melanoma. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK220190 mRNA. Translation: BAD90375.1. Different initiation. AK133251 mRNA. Translation: BAE21579.1. AK166158 mRNA. Translation: BAE38603.1. BC021769 mRNA. Translation: AAH21769.1. Frameshift. |
| IPI | IPI00458122. IPI00647978. IPI00649325. IPI00788354. IPI00788425. |
| RefSeq | NP_570949.2. NM_130879.2. |
| UniGene | Mm.218478. |
3D structure databases | |
| HSSP | HSSP built from PDB template 2AYN based on UniProtKB P54578. |
| ProteinModelPortal | Q3V0C5. |
| SMR | Q3V0C5. Positions 83-417, 960-1021. |
| ModBase | Search... |
Protein family/group databases | |
| MEROPS | C19.068. |
PTM databases | |
| PhosphoSite | Q3V0C5. |
Proteomic databases | |
| PaxDb | Q3V0C5. |
| PRIDE | Q3V0C5. |
Protocols and materials databases | |
| DNASU | 170707. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000055131; ENSMUSP00000055016; ENSMUSG00000043411. |
| GeneID | 170707. |
| KEGG | mmu:170707. |
| UCSC | uc008vjh.1. mouse. uc008vji.1. mouse. uc008vjj.1. mouse. |
Organism-specific databases | |
| CTD | 84196. |
| MGI | MGI:2158502. Usp48. |
| Rouge | Search... |
Phylogenomic databases | |
| eggNOG | COG5077. |
| GeneTree | ENSGT00630000089581. |
| HOGENOM | HOG000231639. |
| HOVERGEN | HBG080368. |
| KO | K11858. |
| OMA | LSNWPED. |
| OrthoDB | EOG4GF3DC. |
Gene expression databases | |
| ArrayExpress | Q3V0C5. |
| Bgee | Q3V0C5. |
| CleanEx | MM_USP48. |
| Genevestigator | Q3V0C5. |
| GermOnline | ENSMUSG00000043411. Mus musculus. |
Family and domain databases | |
| InterPro | IPR006615. Pept_C19_DUSP. IPR018200. Pept_C19ubi-hydrolase_C_CS. IPR001394. Peptidase_C19. IPR019955. Ubiquitin_supergroup. [Graphical view] |
| Pfam | PF00443. UCH. 1 hit. [Graphical view] |
| PROSITE | PS51283. DUSP. 3 hits. PS00299. UBIQUITIN_1. False negative. PS50053. UBIQUITIN_2. 1 hit. PS00972. UCH_2_1. False negative. PS00973. UCH_2_2. 1 hit. PS50235. UCH_2_3. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | USP48. mouse. |
| NextBio | 370218. |
| SOURCE | Search... |
Entry information
| Entry name | UBP48_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q3V0C5 Secondary accession number(s): Q3TM39, Q571J9, Q8VDJ1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| Peptidase families Classification of peptidase families and list of entries |
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
