Q3UZH8 (Q3UZH8_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL BAE21879.1

Gene names

Name:

Ctcf MGI 109447

Organism

Mus musculus (Mouse) EMBL BAE21879.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	77 AA.
Sequence status	Fragment.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	dosage compensation by inactivation of X chromosome Traceable author statement PubMed 11743158. Source: MGI maintenance of DNA methylation Inferred from mutant phenotype PubMed 14716017. Source: MGI negative regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: Compara nucleosome positioning Inferred from electronic annotation. Source: Compara positive regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: Compara regulation of gene expression by genetic imprinting Inferred from direct assay PubMed 12461525PubMed 15143173. Source: MGI regulation of molecular function, epigenetic Inferred from electronic annotation. Source: Compara regulation of transcription, DNA-dependent Inferred from direct assay PubMed 15143173. Source: MGI
Cellular_component	chromosome, centromeric region Inferred from electronic annotation. Source: Compara condensed chromosome Inferred from electronic annotation. Source: Compara nucleolus Inferred from electronic annotation. Source: Compara nucleoplasm Inferred from electronic annotation. Source: Compara nucleus Inferred from direct assay PubMed 12011441PubMed 15572351. Source: MGI
Molecular_function	DNA binding Inferred from direct assay PubMed 11743158PubMed 12461525PubMed 15143173PubMed 15340049. Source: MGI chromatin insulator sequence binding Inferred from electronic annotation. Source: Compara sequence-specific DNA binding Inferred from electronic annotation. Source: Compara sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: Compara transcription regulatory region DNA binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL BAE21879.1

Sequences

	Sequence		Length	Mass (Da)
	Q3UZH8 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: 4E1454471B242E0A	FASTA	77	8,439
	10 20 30 40 50 60 RRGRPPGRTN QPKQNQPTAI IQVEDQNTGA IENIIVEVKK EPDAEPAEGE EEEAQAATTD 70 APNGDLTPEM ILSMMDR

References

[1]	"High-efficiency full-length cDNA cloning." Carninci P., Hayashizaki Y. Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
[2]	"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes." Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y. Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
[3]	"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer." Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y. Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
[4]	"Functional annotation of a full-length mouse cDNA collection." The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Nature 409:685-690(2001) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
[5]	"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team Nature 420:563-573(2002) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
[6]	Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y. Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
[7]	"The Transcriptional Landscape of the Mammalian Genome." The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) Science 309:1559-1563(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
[8]	"Antisense Transcription in the Mammalian Transcriptome." RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE21879.1. Tissue: Whole body EMBL BAE21879.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AK133842 mRNA. Translation: BAE21879.1.
IPI	IPI00320741.
UniGene	Mm.269474.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q3UZH8.
PTM databases
PhosphoSite	Q3UZH8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
MGI	MGI:109447. Ctcf.
Phylogenomic databases
InParanoid	Q3UZH8.
Gene expression databases
ArrayExpress	Q3UZH8.
Bgee	Q3UZH8.
Genevestigator	Q3UZH8.
Family and domain databases
ProtoNet	Search...
Other
ChiTaRS	CTCF. mouse.
SOURCE	Search...

Entry information

Entry name

Q3UZH8_MOUSE

Accession

Primary (citable) accession number: Q3UZH8

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	April 3, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)