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Q3UZ81 (Q3UZ81_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Il16 MGI 1270855
OrganismMus musculus (Mouse) EMBL BAE21977.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length624 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 2 PDZ (DHR) domains. RuleBase RU003354

Sequences

Sequence LengthMass (Da)Tools
Q3UZ81 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 01EC116F349B816E

FASTA62466,433
        10         20         30         40         50         60 
MDYSFDITAE DPWVRISDCI KNLFSPIMSE NHSHTPLQPN TSLGEEDGTQ GCPEGGLSKM 

        70         80         90        100        110        120 
DAANGAPRVY KSADGSTVKK GPPVAPKPAW FRQSLKGLRN RAPDPRRPPE VASAIQPTPV 

       130        140        150        160        170        180 
SRDPPGPQPQ ASSSIRQRIS SFENFGSSQL PDRGVQRLSL QPSSGETTKF PGKQDGGRFS 

       190        200        210        220        230        240 
GLLGQGATVT AKHRQTEVES MSTTFPNSSE VRDPGLPESP PPGQRPSTKA LSPDPLLRLL 

       250        260        270        280        290        300 
TTQSEDTQGP GLKMPSQRAR SFPLTRTQSC ETKLLDEKAS KLYSISSQLS SAVMKSLLCL 

       310        320        330        340        350        360 
PSSVSCGQIT CIPKERVSPK SPCNNSSAAE GFGEAMASDT GFSLNLSELR EYSEGLTEPG 

       370        380        390        400        410        420 
ETEDRNHCSS QAGQSVISLL SAEELEKLIE EVRVLDEATL KQLDSIHVTI LHKEEGAGLG 

       430        440        450        460        470        480 
FSLAGGADLE NKVITVHRVF TNGLASQGGT IQKGNEVLSI NGKSLKGATH NDALAILRQA 

       490        500        510        520        530        540 
RDPRQAVIVT RRTTVEATHD LNSSTDSTAS ASAASDISVE SKEATVCTVT LEKTSAGLGF 

       550        560        570        580        590        600 
SLEGGKGSLH GDKPLTINRI FKGTEQGEMV QPGDEILQLA GTAVQGLTRF EAWNVIKALP 

       610        620 
DGPVTIVIRR TSLQCKQTTA SADS 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE21977.1.
Tissue: Thymus EMBL BAE21977.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK134007 mRNA. Translation: BAE21977.1.
UniGeneMm.10137.

3D structure databases

ProteinModelPortalQ3UZ81.
SMRQ3UZ81. Positions 398-624.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCuc009idt.1. mouse.

Organism-specific databases

MGIMGI:1270855. Il16.

Phylogenomic databases

HOVERGENHBG000100.
InParanoidQ3UZ81.

Gene expression databases

GenevestigatorQ3UZ81.

Family and domain databases

Gene3D2.30.42.10. 2 hits.
InterProIPR020450. IL-16.
IPR001478. PDZ.
[Graphical view]
PfamPF00595. PDZ. 2 hits.
[Graphical view]
PRINTSPR01931. INTRLEUKIN16.
SMARTSM00228. PDZ. 2 hits.
[Graphical view]
SUPFAMSSF50156. SSF50156. 2 hits.
PROSITEPS50106. PDZ. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ3UZ81_MOUSE
AccessionPrimary (citable) accession number: Q3UZ81
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 16, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)