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Protein
Submitted name:

Putative uncharacterized protein

Gene

Selp

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. calcium-dependent protein binding Source: MGI
  2. fucose binding Source: MGI
  3. glycoprotein binding Source: MGI
  4. heparin binding Source: MGI
  5. lipopolysaccharide binding Source: MGI
  6. oligosaccharide binding Source: MGI
  7. sialic acid binding Source: MGI

GO - Biological processi

  1. cellular response to interleukin-6 Source: MGI
  2. heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules Source: MGI
  3. inflammatory response Source: MGI
  4. leukocyte cell-cell adhesion Source: MGI
  5. leukocyte migration Source: MGI
  6. leukocyte tethering or rolling Source: MGI
  7. positive regulation of leukocyte migration Source: MGI
  8. positive regulation of phosphatidylinositol 3-kinase signaling Source: MGI
  9. regulation of integrin activation Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:SelpImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98280. Selp.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: MGI
  2. external side of plasma membrane Source: MGI
  3. extracellular space Source: MGI
  4. membrane Source: MGI
  5. nucleoplasm Source: MGI
  6. platelet alpha granule membrane Source: MGI
Complete GO annotation...

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Expressioni

Gene expression databases

GenevestigatoriQ3UWM1.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000236254.

Family and domain databases

InterProiIPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP_dom.
[Graphical view]
PfamiPF00084. Sushi. 2 hits.
[Graphical view]
PRINTSiPR00343. SELECTIN.
SMARTiSM00032. CCP. 2 hits.
[Graphical view]
SUPFAMiSSF57535. SSF57535. 2 hits.
PROSITEiPS50923. SUSHI. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3UWM1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ITSLPAPAVR CPALTTPGQG TMSCQHHLGS FGPNTTCYFG CKTGFTLRGA
60 70 80 90 100
NSLRCRASGQ WTAVTPMCRA VKCSELHMDT AVAMNCSNPW GNFSYGSTCT
110 120 130 140 150
FQCPEGQSLN GSVRATCRED GHWSDAMPTC QAGTLTIQEA LTYLGGAVAS
160 170 180 190
TTGLAVGGTL LALLRKRLRK KDDGKCPLNP HSHLGTYGVY TNAAYDPTP
Length:199
Mass (Da):21,029
Last modified:October 10, 2005 - v1
Checksum:i49B56C2A7C716D5F
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK136243 mRNA. Translation: BAE22893.1.
UniGeneiMm.3337.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK136243 mRNA. Translation: BAE22893.1.
UniGeneiMm.3337.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:98280. Selp.

Phylogenomic databases

HOGENOMiHOG000236254.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

GenevestigatoriQ3UWM1.

Family and domain databases

InterProiIPR002396. Selectin_superfamily.
IPR000436. Sushi_SCR_CCP_dom.
[Graphical view]
PfamiPF00084. Sushi. 2 hits.
[Graphical view]
PRINTSiPR00343. SELECTIN.
SMARTiSM00032. CCP. 2 hits.
[Graphical view]
SUPFAMiSSF57535. SSF57535. 2 hits.
PROSITEiPS50923. SUSHI. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2000)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2004)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: In vitro fertilized eggsImported.

Entry informationi

Entry nameiQ3UWM1_MOUSE
AccessioniPrimary (citable) accession number: Q3UWM1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 10, 2005
Last sequence update: October 10, 2005
Last modified: March 3, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.