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Q3UWK7 (Q3UWK7_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Putative uncharacterized protein EMBL BAE22907.1
Gene names
Name:Cacna1f MGI 1859639
OrganismMus musculus (Mouse) EMBL BAE22907.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length771 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Membrane; Multi-pass membrane protein By similarity RuleBase RU003808.

Sequence similarities

Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family. [View classification] RuleBase RU003808

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAE22907.1

Sequences

Sequence LengthMass (Da)Tools
Q3UWK7 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: A8FF82DE900412FB

FASTA77186,181
        10         20         30         40         50         60 
TVALAMQHYE QTAPFNYAMD ILNMVFTGLF TIEMVLKIIA FKPKHYFADA WNTFDALIVV 

        70         80         90        100        110        120 
GSVVDIAVTE VNSSEDSSRI SITFFRLFRV MRLVKLLSKG EGIRTLLWTF IKSFQALPYV 

       130        140        150        160        170        180 
ALLIAMIFFI YAVIGMQMFG KVALQDGTQI NRNNNFQTFP QAVLLLFRCA TGEAWQEIML 

       190        200        210        220        230        240 
ASLPGNRCDP ESDFGPGEEF TCGSSFAIVY FISFFMLCAF LIINLFVAVI MDNFDYLTRD 

       250        260        270        280        290        300 
WSILGPHHLD EFKRIWSEYD PGAKGRIKHL DVVALLRRIQ PPLGFGKLCP HRVACKRLVA 

       310        320        330        340        350        360 
MNVPLNSDGT VTFNATLFAL VRTSLKIKTE GNLDQANQEL RMVIKKIWKR IKQKLLDEVI 

       370        380        390        400        410        420 
PPPDEEEVTV GKFYATFLIQ DYFRKFRRRK EKGLLGREAP TSTSSALQAG LRSLQDLGPE 

       430        440        450        460        470        480 
IRQALTYDTE EEEEEEEAVG QEAEEEEAEN NPEPYKDSID SQPQSRWNSR ISVSLPVKEK 

       490        500        510        520        530        540 
LPDSLSTGPS DDDGLAPNSR QPSVIQAGSQ PHRRSSGVFM FTIPEEGSIQ LKGTQGQDNQ 

       550        560        570        580        590        600 
NEEQEVPDWT PDLDEQAGTP SNPVLLPPHW SQQHVNGHHV PRRRLLPPTP AGRKPSFTIQ 

       610        620        630        640        650        660 
CLQRQGSCED LPIPGTYHRG RTSGPSRAQG SWAAPPQKGR LLYAPLLLVE ESTVGEGYLG 

       670        680        690        700        710        720 
KLGGPLRTFT CLQVPGAHPN PSHRKRGSAD SLVEAVLISE GLGLFAQDPR FVALAKQEIA 

       730        740        750        760        770 
DACHLTLDEM DSAASDLLAQ RTTSLYSDEE SILSRFDEED LGDEMACVHA L

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE22907.1.
Tissue: Eyeball EMBL BAE22907.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK136273 mRNA. Translation: BAE22907.1.
IPIIPI00775922.
UniGeneMm.289647.

3D structure databases

ProteinModelPortalQ3UWK7.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ3UWK7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

UCSCuc012hei.1. mouse.

Organism-specific databases

MGIMGI:1859639. Cacna1f.

Gene expression databases

ArrayExpressQ3UWK7.
BgeeQ3UWK7.
GenevestigatorQ3UWK7.

Family and domain databases

InterProIPR005821. Ion_trans_dom.
IPR014873. VDCC_a1su_IQ.
IPR002077. VDCCAlpha1.
[Graphical view]
PfamPF08763. Ca_chan_IQ. 1 hit.
PF00520. Ion_trans. 1 hit.
[Graphical view]
PRINTSPR00167. CACHANNEL.
SMARTSM01062. Ca_chan_IQ. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ3UWK7_MOUSE
AccessionPrimary (citable) accession number: Q3UWK7
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 3, 2013
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info