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Q3UWK7

- Q3UWK7_MOUSE

UniProt

Q3UWK7 - Q3UWK7_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Cacna1f

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. high voltage-gated calcium channel activity Source: RefGenome
    2. voltage-gated calcium channel activity Source: MGI

    GO - Biological processi

    1. axonogenesis Source: MGI
    2. calcium ion import Source: RefGenome
    3. cellular calcium ion homeostasis Source: MGI
    4. dendrite morphogenesis Source: MGI
    5. membrane depolarization during action potential Source: RefGenome
    6. retina development in camera-type eye Source: MGI
    7. visual perception Source: MGI

    Keywords - Molecular functioni

    Calcium channelUniRule annotation, Ion channel, Voltage-gated channelUniRule annotationSAAS annotation

    Keywords - Biological processi

    Calcium transport, Ion transport, Transport

    Keywords - Ligandi

    Calcium

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:Cacna1fImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:1859639. Cacna1f.

    Subcellular locationi

    Membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

    GO - Cellular componenti

    1. plasma membrane Source: RefGenome
    2. voltage-gated calcium channel complex Source: InterPro

    Keywords - Cellular componenti

    Membrane

    Expressioni

    Gene expression databases

    BgeeiQ3UWK7.
    GenevestigatoriQ3UWK7.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3UWK7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the calcium channel alpha-1 subunit (TC 1.A.1.11) family. [View classification]UniRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helixSAAS annotation

    Family and domain databases

    Gene3Di1.20.120.350. 1 hit.
    InterProiIPR027359. Channel_four-helix_dom.
    IPR005821. Ion_trans_dom.
    IPR014873. VDCC_a1su_IQ.
    IPR002077. VDCCAlpha1.
    [Graphical view]
    PfamiPF08763. Ca_chan_IQ. 1 hit.
    PF00520. Ion_trans. 1 hit.
    [Graphical view]
    PRINTSiPR00167. CACHANNEL.
    SMARTiSM01062. Ca_chan_IQ. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q3UWK7-1 [UniParc]FASTAAdd to Basket

    « Hide

    TVALAMQHYE QTAPFNYAMD ILNMVFTGLF TIEMVLKIIA FKPKHYFADA    50
    WNTFDALIVV GSVVDIAVTE VNSSEDSSRI SITFFRLFRV MRLVKLLSKG 100
    EGIRTLLWTF IKSFQALPYV ALLIAMIFFI YAVIGMQMFG KVALQDGTQI 150
    NRNNNFQTFP QAVLLLFRCA TGEAWQEIML ASLPGNRCDP ESDFGPGEEF 200
    TCGSSFAIVY FISFFMLCAF LIINLFVAVI MDNFDYLTRD WSILGPHHLD 250
    EFKRIWSEYD PGAKGRIKHL DVVALLRRIQ PPLGFGKLCP HRVACKRLVA 300
    MNVPLNSDGT VTFNATLFAL VRTSLKIKTE GNLDQANQEL RMVIKKIWKR 350
    IKQKLLDEVI PPPDEEEVTV GKFYATFLIQ DYFRKFRRRK EKGLLGREAP 400
    TSTSSALQAG LRSLQDLGPE IRQALTYDTE EEEEEEEAVG QEAEEEEAEN 450
    NPEPYKDSID SQPQSRWNSR ISVSLPVKEK LPDSLSTGPS DDDGLAPNSR 500
    QPSVIQAGSQ PHRRSSGVFM FTIPEEGSIQ LKGTQGQDNQ NEEQEVPDWT 550
    PDLDEQAGTP SNPVLLPPHW SQQHVNGHHV PRRRLLPPTP AGRKPSFTIQ 600
    CLQRQGSCED LPIPGTYHRG RTSGPSRAQG SWAAPPQKGR LLYAPLLLVE 650
    ESTVGEGYLG KLGGPLRTFT CLQVPGAHPN PSHRKRGSAD SLVEAVLISE 700
    GLGLFAQDPR FVALAKQEIA DACHLTLDEM DSAASDLLAQ RTTSLYSDEE 750
    SILSRFDEED LGDEMACVHA L 771
    Length:771
    Mass (Da):86,181
    Last modified:October 11, 2005 - v1
    Checksum:iA8FF82DE900412FB
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK136273 mRNA. Translation: BAE22907.1.
    UniGeneiMm.289647.

    Genome annotation databases

    UCSCiuc012hei.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK136273 mRNA. Translation: BAE22907.1 .
    UniGenei Mm.289647.

    3D structure databases

    ProteinModelPortali Q3UWK7.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    UCSCi uc012hei.1. mouse.

    Organism-specific databases

    MGIi MGI:1859639. Cacna1f.

    Miscellaneous databases

    SOURCEi Search...

    Gene expression databases

    Bgeei Q3UWK7.
    Genevestigatori Q3UWK7.

    Family and domain databases

    Gene3Di 1.20.120.350. 1 hit.
    InterProi IPR027359. Channel_four-helix_dom.
    IPR005821. Ion_trans_dom.
    IPR014873. VDCC_a1su_IQ.
    IPR002077. VDCCAlpha1.
    [Graphical view ]
    Pfami PF08763. Ca_chan_IQ. 1 hit.
    PF00520. Ion_trans. 1 hit.
    [Graphical view ]
    PRINTSi PR00167. CACHANNEL.
    SMARTi SM01062. Ca_chan_IQ. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    6. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: EyeballImported.

    Entry informationi

    Entry nameiQ3UWK7_MOUSE
    AccessioniPrimary (citable) accession number: Q3UWK7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)