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Q3UV48

- LRC30_MOUSE

UniProt

Q3UV48 - LRC30_MOUSE

Protein

Leucine-rich repeat-containing protein 30

Gene

Lrrc30

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 67 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Leucine-rich repeat-containing protein 30
    Gene namesi
    Name:Lrrc30
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Unplaced

    Organism-specific databases

    MGIiMGI:2685172. Lrrc30.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 300300Leucine-rich repeat-containing protein 30PRO_0000310987Add
    BLAST

    Proteomic databases

    PRIDEiQ3UV48.

    PTM databases

    PhosphoSiteiQ3UV48.

    Expressioni

    Gene expression databases

    CleanExiMM_LRRC30.
    GenevestigatoriQ3UV48.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3UV48.
    SMRiQ3UV48. Positions 7-281.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati47 – 6923LRR 1Add
    BLAST
    Repeati70 – 9223LRR 2Add
    BLAST
    Repeati94 – 11522LRR 3Add
    BLAST
    Repeati116 – 13823LRR 4Add
    BLAST
    Repeati139 – 16123LRR 5Add
    BLAST
    Repeati162 – 18423LRR 6Add
    BLAST
    Repeati186 – 20722LRR 7Add
    BLAST
    Repeati209 – 23022LRR 8Add
    BLAST
    Repeati231 – 25323LRR 9Add
    BLAST
    Repeati261 – 28626LRR 10Add
    BLAST

    Sequence similaritiesi

    Contains 10 LRR (leucine-rich) repeats.Curated

    Keywords - Domaini

    Leucine-rich repeat, Repeat

    Phylogenomic databases

    eggNOGiCOG4886.
    HOGENOMiHOG000116557.
    HOVERGENiHBG099497.
    InParanoidiQ3UV48.
    PhylomeDBiQ3UV48.

    Family and domain databases

    InterProiIPR001611. Leu-rich_rpt.
    IPR025875. Leu-rich_rpt_4.
    IPR003591. Leu-rich_rpt_typical-subtyp.
    [Graphical view]
    PfamiPF00560. LRR_1. 1 hit.
    PF12799. LRR_4. 1 hit.
    PF13855. LRR_8. 1 hit.
    [Graphical view]
    SMARTiSM00369. LRR_TYP. 2 hits.
    [Graphical view]
    PROSITEiPS51450. LRR. 8 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3UV48-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGTKQSRASS NDKDPKRLLL GKRQKFSSWD DTLLLGKDPR SLLKRGMRHV    50
    SFSLVTKGMT DIPDFLWGLL EVQKLNLSHN QLRVLPPEVG RLTRIVVLNL 100
    CGNCLKSLPR EVSLLQSLKV LFLNMNCLAE VPAELSLCRN LEVLSMSHNC 150
    LSQLPASFAD LSRLRKLNLS NNYFAHIPLC VFSLKELDFL HVGSNRLKNI 200
    AESIQCLASL QIFIAESNNI HSFPRSLCLV TSLELLNLNN NDIQTLPDEL 250
    YLLCRLGRIA WNPMDKGLHI SHNPLSKPLP ELVEGGLEML YSYLKDKKHN 300
    Length:300
    Mass (Da):33,931
    Last modified:October 11, 2005 - v1
    Checksum:i891936A8EE2065F9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK137598 mRNA. Translation: BAE23425.1.
    CCDSiCCDS28949.1.
    RefSeqiNP_001028512.2. NM_001033340.3.
    UniGeneiMm.295736.

    Genome annotation databases

    GeneIDi240131.
    KEGGimmu:240131.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK137598 mRNA. Translation: BAE23425.1 .
    CCDSi CCDS28949.1.
    RefSeqi NP_001028512.2. NM_001033340.3.
    UniGenei Mm.295736.

    3D structure databases

    ProteinModelPortali Q3UV48.
    SMRi Q3UV48. Positions 7-281.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei Q3UV48.

    Proteomic databases

    PRIDEi Q3UV48.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 240131.
    KEGGi mmu:240131.

    Organism-specific databases

    CTDi 339291.
    MGIi MGI:2685172. Lrrc30.

    Phylogenomic databases

    eggNOGi COG4886.
    HOGENOMi HOG000116557.
    HOVERGENi HBG099497.
    InParanoidi Q3UV48.
    PhylomeDBi Q3UV48.

    Miscellaneous databases

    NextBioi 384476.
    PROi Q3UV48.
    SOURCEi Search...

    Gene expression databases

    CleanExi MM_LRRC30.
    Genevestigatori Q3UV48.

    Family and domain databases

    InterProi IPR001611. Leu-rich_rpt.
    IPR025875. Leu-rich_rpt_4.
    IPR003591. Leu-rich_rpt_typical-subtyp.
    [Graphical view ]
    Pfami PF00560. LRR_1. 1 hit.
    PF12799. LRR_4. 1 hit.
    PF13855. LRR_8. 1 hit.
    [Graphical view ]
    SMARTi SM00369. LRR_TYP. 2 hits.
    [Graphical view ]
    PROSITEi PS51450. LRR. 8 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C57BL/6J.
      Tissue: Bone.

    Entry informationi

    Entry nameiLRC30_MOUSE
    AccessioniPrimary (citable) accession number: Q3UV48
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 13, 2007
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 67 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3