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Q3UV48 (LRC30_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Leucine-rich repeat-containing protein 30
Gene names
Name:Lrrc30
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length300 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 10 LRR (leucine-rich) repeats.

Ontologies

Keywords
   DomainLeucine-rich repeat
Repeat
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 300300Leucine-rich repeat-containing protein 30
PRO_0000310987

Regions

Repeat47 – 6923LRR 1
Repeat70 – 9223LRR 2
Repeat94 – 11522LRR 3
Repeat116 – 13823LRR 4
Repeat139 – 16123LRR 5
Repeat162 – 18423LRR 6
Repeat186 – 20722LRR 7
Repeat209 – 23022LRR 8
Repeat231 – 25323LRR 9
Repeat261 – 28626LRR 10

Sequences

Sequence LengthMass (Da)Tools
Q3UV48 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 891936A8EE2065F9

FASTA30033,931
        10         20         30         40         50         60 
MGTKQSRASS NDKDPKRLLL GKRQKFSSWD DTLLLGKDPR SLLKRGMRHV SFSLVTKGMT 

        70         80         90        100        110        120 
DIPDFLWGLL EVQKLNLSHN QLRVLPPEVG RLTRIVVLNL CGNCLKSLPR EVSLLQSLKV 

       130        140        150        160        170        180 
LFLNMNCLAE VPAELSLCRN LEVLSMSHNC LSQLPASFAD LSRLRKLNLS NNYFAHIPLC 

       190        200        210        220        230        240 
VFSLKELDFL HVGSNRLKNI AESIQCLASL QIFIAESNNI HSFPRSLCLV TSLELLNLNN 

       250        260        270        280        290        300 
NDIQTLPDEL YLLCRLGRIA WNPMDKGLHI SHNPLSKPLP ELVEGGLEML YSYLKDKKHN 

« Hide

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J.
Tissue: Bone.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK137598 mRNA. Translation: BAE23425.1.
CCDSCCDS28949.1.
RefSeqNP_001028512.2. NM_001033340.3.
UniGeneMm.295736.

3D structure databases

ProteinModelPortalQ3UV48.
SMRQ3UV48. Positions 7-281.
ModBaseSearch...
MobiDBSearch...

PTM databases

PhosphoSiteQ3UV48.

Proteomic databases

PRIDEQ3UV48.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID240131.
KEGGmmu:240131.

Organism-specific databases

CTD339291.
MGIMGI:2685172. Lrrc30.

Phylogenomic databases

eggNOGCOG4886.
HOGENOMHOG000116557.
HOVERGENHBG099497.
InParanoidQ3UV48.
PhylomeDBQ3UV48.

Gene expression databases

CleanExMM_LRRC30.
GenevestigatorQ3UV48.

Family and domain databases

InterProIPR001611. Leu-rich_rpt.
IPR025875. Leu-rich_rpt_4.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamPF00560. LRR_1. 1 hit.
PF12799. LRR_4. 1 hit.
PF13855. LRR_8. 1 hit.
[Graphical view]
SMARTSM00369. LRR_TYP. 2 hits.
[Graphical view]
PROSITEPS51450. LRR. 8 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio384476.
PROQ3UV48.
SOURCESearch...

Entry information

Entry nameLRC30_MOUSE
AccessionPrimary (citable) accession number: Q3UV48
Entry history
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: October 11, 2005
Last modified: July 9, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot