Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q3UV48

- LRC30_MOUSE

UniProt

Q3UV48 - LRC30_MOUSE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Leucine-rich repeat-containing protein 30

Gene

Lrrc30

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 30
Gene namesi
Name:Lrrc30
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Unplaced

Organism-specific databases

MGIiMGI:2685172. Lrrc30.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 300300Leucine-rich repeat-containing protein 30PRO_0000310987Add
BLAST

Proteomic databases

PRIDEiQ3UV48.

PTM databases

PhosphoSiteiQ3UV48.

Expressioni

Gene expression databases

CleanExiMM_LRRC30.
GenevestigatoriQ3UV48.

Structurei

3D structure databases

ProteinModelPortaliQ3UV48.
SMRiQ3UV48. Positions 31-281.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati47 – 6923LRR 1Add
BLAST
Repeati70 – 9223LRR 2Add
BLAST
Repeati94 – 11522LRR 3Add
BLAST
Repeati116 – 13823LRR 4Add
BLAST
Repeati139 – 16123LRR 5Add
BLAST
Repeati162 – 18423LRR 6Add
BLAST
Repeati186 – 20722LRR 7Add
BLAST
Repeati209 – 23022LRR 8Add
BLAST
Repeati231 – 25323LRR 9Add
BLAST
Repeati261 – 28626LRR 10Add
BLAST

Sequence similaritiesi

Contains 10 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiCOG4886.
HOGENOMiHOG000116557.
HOVERGENiHBG099497.
InParanoidiQ3UV48.
PhylomeDBiQ3UV48.

Family and domain databases

InterProiIPR001611. Leu-rich_rpt.
IPR025875. Leu-rich_rpt_4.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF00560. LRR_1. 1 hit.
PF12799. LRR_4. 1 hit.
PF13855. LRR_8. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 2 hits.
[Graphical view]
PROSITEiPS51450. LRR. 8 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3UV48-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGTKQSRASS NDKDPKRLLL GKRQKFSSWD DTLLLGKDPR SLLKRGMRHV
60 70 80 90 100
SFSLVTKGMT DIPDFLWGLL EVQKLNLSHN QLRVLPPEVG RLTRIVVLNL
110 120 130 140 150
CGNCLKSLPR EVSLLQSLKV LFLNMNCLAE VPAELSLCRN LEVLSMSHNC
160 170 180 190 200
LSQLPASFAD LSRLRKLNLS NNYFAHIPLC VFSLKELDFL HVGSNRLKNI
210 220 230 240 250
AESIQCLASL QIFIAESNNI HSFPRSLCLV TSLELLNLNN NDIQTLPDEL
260 270 280 290 300
YLLCRLGRIA WNPMDKGLHI SHNPLSKPLP ELVEGGLEML YSYLKDKKHN
Length:300
Mass (Da):33,931
Last modified:October 11, 2005 - v1
Checksum:i891936A8EE2065F9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK137598 mRNA. Translation: BAE23425.1.
CCDSiCCDS28949.1.
RefSeqiNP_001028512.2. NM_001033340.3.
UniGeneiMm.295736.

Genome annotation databases

GeneIDi240131.
KEGGimmu:240131.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK137598 mRNA. Translation: BAE23425.1 .
CCDSi CCDS28949.1.
RefSeqi NP_001028512.2. NM_001033340.3.
UniGenei Mm.295736.

3D structure databases

ProteinModelPortali Q3UV48.
SMRi Q3UV48. Positions 31-281.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei Q3UV48.

Proteomic databases

PRIDEi Q3UV48.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 240131.
KEGGi mmu:240131.

Organism-specific databases

CTDi 339291.
MGIi MGI:2685172. Lrrc30.

Phylogenomic databases

eggNOGi COG4886.
HOGENOMi HOG000116557.
HOVERGENi HBG099497.
InParanoidi Q3UV48.
PhylomeDBi Q3UV48.

Miscellaneous databases

NextBioi 384476.
PROi Q3UV48.
SOURCEi Search...

Gene expression databases

CleanExi MM_LRRC30.
Genevestigatori Q3UV48.

Family and domain databases

InterProi IPR001611. Leu-rich_rpt.
IPR025875. Leu-rich_rpt_4.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view ]
Pfami PF00560. LRR_1. 1 hit.
PF12799. LRR_4. 1 hit.
PF13855. LRR_8. 1 hit.
[Graphical view ]
SMARTi SM00369. LRR_TYP. 2 hits.
[Graphical view ]
PROSITEi PS51450. LRR. 8 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Bone.

Entry informationi

Entry nameiLRC30_MOUSE
AccessioniPrimary (citable) accession number: Q3UV48
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: October 11, 2005
Last modified: October 29, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3