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Protein

TBC1 domain family member 24

Gene

Tbc1d24

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

May act as a GTPase-activating protein for Rab family protein(s). Involved in neuronal projections development, probably through a negative modulation of ARF6 function.1 Publication

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

GTPase activation

Names & Taxonomyi

Protein namesi
Recommended name:
TBC1 domain family member 24
Gene namesi
Name:Tbc1d24
Synonyms:Kiaa1171
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 17

Organism-specific databases

MGIiMGI:2443456. Tbc1d24.

Subcellular locationi

  • Cytoplasm By similarity

  • Note: Partially expressed at the plasma membrane.By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002885051 – 561TBC1 domain family member 24Add BLAST561

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei475PhosphoserineBy similarity1
Modified residuei482PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ3UUG6.
PeptideAtlasiQ3UUG6.
PRIDEiQ3UUG6.

PTM databases

iPTMnetiQ3UUG6.
PhosphoSitePlusiQ3UUG6.

Expressioni

Tissue specificityi

Expressed in brain, particularly at the level of the cortex and the hippocampus. Expressed in the inner ear in spiral ganglion cells, a collection of neurons critical for hearing and balance.2 Publications

Gene expression databases

BgeeiENSMUSG00000036473.
CleanExiMM_TBC1D24.
ExpressionAtlasiQ3UUG6. baseline and differential.
GenevisibleiQ3UUG6. MM.

Interactioni

Subunit structurei

Interacts with ARF6.By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000094989.

Structurei

3D structure databases

ProteinModelPortaliQ3UUG6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini45 – 236Rab-GAP TBCAdd BLAST192
Domaini368 – 556TLDAdd BLAST189

Sequence similaritiesi

Contains 1 Rab-GAP TBC domain.Curated
Contains 1 TLD domain.Curated

Phylogenomic databases

eggNOGiKOG2801. Eukaryota.
ENOG410ZI2X. LUCA.
GeneTreeiENSGT00840000129717.
HOVERGENiHBG068667.
InParanoidiQ3UUG6.
OrthoDBiEOG091G03K9.
PhylomeDBiQ3UUG6.
TreeFamiTF315420.

Family and domain databases

InterProiIPR000195. Rab-GTPase-TBC_dom.
IPR006571. TLDc_dom.
[Graphical view]
PfamiPF00566. RabGAP-TBC. 1 hit.
PF07534. TLD. 1 hit.
[Graphical view]
SMARTiSM00164. TBC. 1 hit.
SM00584. TLDc. 1 hit.
[Graphical view]
SUPFAMiSSF47923. SSF47923. 2 hits.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q3UUG6-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDPPGYNCFV DKDKMDASIQ DLGPKELNCT ELQELKQLAR QGYWAQSHTL
60 70 80 90 100
RGKVYQRLIR DIPCRTVTPD ASVYSDIVGK IVGKHSSSSL PLPEFVDNTQ
110 120 130 140 150
VPTYCLNTRG EGAVRKILLC IANQFPDISF CPALPAVVAL LLHYSIDEAE
160 170 180 190 200
CFEKACRILS CNDPTKKLID QSFLAFESSC MTFGDLVNKY CQAAHKLMVA
210 220 230 240 250
VSEDVLQVYS DWQRWLFGEL PLNYFARVFD VFLVEGYKVL YRVALAILKF
260 270 280 290 300
FHKVRAGQPL ESDNVKQDIR MFVKDIAKTV SPEKLLEKAF AIRLFSRKEI
310 320 330 340 350
QLLQMANEKA LRQKGITVKQ KSVSLSKRQF VHLAVHAENF HSEIVSVKEM
360 370 380 390 400
RDIWSWIPER FALCQPLLLF SSLQHGYSLS RFYFQCEGHE PTLLLIKTTQ
410 420 430 440 450
KEVCGAYLST DWSERTKFGG KLGFFGTGEC FVFRLQPEVQ RYEWVVIKHP
460 470 480 490 500
ELTKATSLKS SEAAGSSSLI SHCSSDPADR LSPFLAARHF NLPSKTESMF
510 520 530 540 550
MAGGNDCLII GGGGGQALYV DGDLNRGRTG HCDTFNNQPL CSENFLIAAV
560
EAWGFQDPDT E
Length:561
Mass (Da):63,236
Last modified:May 29, 2007 - v2
Checksum:i1C35837B82FF093E
GO
Isoform 2 (identifier: Q3UUG6-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     322-327: Missing.

Show »
Length:555
Mass (Da):62,634
Checksum:i3EFB65D9F9E0A18F
GO

Sequence cautioni

The sequence BAC39035 differs from that shown. Reason: Frameshift at position 113.Curated
The sequence BAC98114 differs from that shown. Reason: Erroneous initiation.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti3P → H in BAE23659 (PubMed:16141072).Curated1
Sequence conflicti14K → R in BAE36174 (PubMed:16141072).Curated1
Sequence conflicti266K → E in BAC39644 (PubMed:16141072).Curated1
Sequence conflicti308E → G in BAC39255 (PubMed:16141072).Curated1
Sequence conflicti471S → G in BAC98114 (PubMed:14621295).Curated1
Sequence conflicti505N → I in BAE28046 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_025702322 – 327Missing in isoform 2. 3 Publications6

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK129304 mRNA. Translation: BAC98114.1. Different initiation.
AK049306 mRNA. Translation: BAC33671.1.
AK049754 mRNA. Translation: BAC33904.1.
AK083833 mRNA. Translation: BAC39035.1. Frameshift.
AK084693 mRNA. Translation: BAC39255.1.
AK086293 mRNA. Translation: BAC39644.1.
AK138431 mRNA. Translation: BAE23659.1.
AK147647 mRNA. Translation: BAE28046.1.
AK161054 mRNA. Translation: BAE36174.1.
BC080845 mRNA. Translation: AAH80845.1.
BC094417 mRNA. Translation: AAH94417.1.
CCDSiCCDS28477.1. [Q3UUG6-2]
CCDS50012.1. [Q3UUG6-1]
RefSeqiNP_001157319.1. NM_001163847.1. [Q3UUG6-1]
NP_001157320.1. NM_001163848.1. [Q3UUG6-1]
NP_001157321.1. NM_001163849.1. [Q3UUG6-1]
NP_001157322.1. NM_001163850.1. [Q3UUG6-2]
NP_001157323.1. NM_001163851.1. [Q3UUG6-2]
NP_001157324.1. NM_001163852.1. [Q3UUG6-2]
NP_001157325.1. NM_001163853.1. [Q3UUG6-2]
NP_775278.3. NM_173186.4. [Q3UUG6-2]
UniGeneiMm.301585.

Genome annotation databases

EnsembliENSMUST00000040474; ENSMUSP00000036458; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000097376; ENSMUSP00000094989; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000167791; ENSMUSP00000127005; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000168378; ENSMUSP00000126107; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000168410; ENSMUSP00000128868; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000171189; ENSMUSP00000128001; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000201089; ENSMUSP00000144250; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000201301; ENSMUSP00000143949; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000201805; ENSMUSP00000143883; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000201960; ENSMUSP00000144208; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000202925; ENSMUSP00000144575; ENSMUSG00000036473. [Q3UUG6-2]
GeneIDi224617.
KEGGimmu:224617.
UCSCiuc008auq.2. mouse. [Q3UUG6-1]
uc008aus.2. mouse. [Q3UUG6-2]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK129304 mRNA. Translation: BAC98114.1. Different initiation.
AK049306 mRNA. Translation: BAC33671.1.
AK049754 mRNA. Translation: BAC33904.1.
AK083833 mRNA. Translation: BAC39035.1. Frameshift.
AK084693 mRNA. Translation: BAC39255.1.
AK086293 mRNA. Translation: BAC39644.1.
AK138431 mRNA. Translation: BAE23659.1.
AK147647 mRNA. Translation: BAE28046.1.
AK161054 mRNA. Translation: BAE36174.1.
BC080845 mRNA. Translation: AAH80845.1.
BC094417 mRNA. Translation: AAH94417.1.
CCDSiCCDS28477.1. [Q3UUG6-2]
CCDS50012.1. [Q3UUG6-1]
RefSeqiNP_001157319.1. NM_001163847.1. [Q3UUG6-1]
NP_001157320.1. NM_001163848.1. [Q3UUG6-1]
NP_001157321.1. NM_001163849.1. [Q3UUG6-1]
NP_001157322.1. NM_001163850.1. [Q3UUG6-2]
NP_001157323.1. NM_001163851.1. [Q3UUG6-2]
NP_001157324.1. NM_001163852.1. [Q3UUG6-2]
NP_001157325.1. NM_001163853.1. [Q3UUG6-2]
NP_775278.3. NM_173186.4. [Q3UUG6-2]
UniGeneiMm.301585.

3D structure databases

ProteinModelPortaliQ3UUG6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000094989.

PTM databases

iPTMnetiQ3UUG6.
PhosphoSitePlusiQ3UUG6.

Proteomic databases

PaxDbiQ3UUG6.
PeptideAtlasiQ3UUG6.
PRIDEiQ3UUG6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000040474; ENSMUSP00000036458; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000097376; ENSMUSP00000094989; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000167791; ENSMUSP00000127005; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000168378; ENSMUSP00000126107; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000168410; ENSMUSP00000128868; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000171189; ENSMUSP00000128001; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000201089; ENSMUSP00000144250; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000201301; ENSMUSP00000143949; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000201805; ENSMUSP00000143883; ENSMUSG00000036473. [Q3UUG6-1]
ENSMUST00000201960; ENSMUSP00000144208; ENSMUSG00000036473. [Q3UUG6-2]
ENSMUST00000202925; ENSMUSP00000144575; ENSMUSG00000036473. [Q3UUG6-2]
GeneIDi224617.
KEGGimmu:224617.
UCSCiuc008auq.2. mouse. [Q3UUG6-1]
uc008aus.2. mouse. [Q3UUG6-2]

Organism-specific databases

CTDi57465.
MGIiMGI:2443456. Tbc1d24.
RougeiSearch...

Phylogenomic databases

eggNOGiKOG2801. Eukaryota.
ENOG410ZI2X. LUCA.
GeneTreeiENSGT00840000129717.
HOVERGENiHBG068667.
InParanoidiQ3UUG6.
OrthoDBiEOG091G03K9.
PhylomeDBiQ3UUG6.
TreeFamiTF315420.

Miscellaneous databases

PROiQ3UUG6.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000036473.
CleanExiMM_TBC1D24.
ExpressionAtlasiQ3UUG6. baseline and differential.
GenevisibleiQ3UUG6. MM.

Family and domain databases

InterProiIPR000195. Rab-GTPase-TBC_dom.
IPR006571. TLDc_dom.
[Graphical view]
PfamiPF00566. RabGAP-TBC. 1 hit.
PF07534. TLD. 1 hit.
[Graphical view]
SMARTiSM00164. TBC. 1 hit.
SM00584. TLDc. 1 hit.
[Graphical view]
SUPFAMiSSF47923. SSF47923. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiTBC24_MOUSE
AccessioniPrimary (citable) accession number: Q3UUG6
Secondary accession number(s): A5D6Q7
, Q3TTZ8, Q3UH11, Q6ZPW4, Q8BH92, Q8BNF2, Q8C3C6, Q8C3W8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: May 29, 2007
Last modified: November 2, 2016
This is version 92 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.