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Protein
Submitted name:

Putative uncharacterized protein

Gene

Stau1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Stau1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1338864. Stau1.

PTM / Processingi

Proteomic databases

PaxDbiQ3UTC8.

Expressioni

Gene expression databases

BgeeiQ3UTC8.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000104861.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini186 – 25368DRBM (double-stranded RNA-binding)InterPro annotationAdd
BLAST
Domaini288 – 35669DRBM (double-stranded RNA-binding)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG3732. Eukaryota.
ENOG410XSCK. LUCA.
HOVERGENiHBG005013.
KOiK17597.

Family and domain databases

Gene3Di3.30.160.20. 3 hits.
InterProiIPR014720. dsRBD_dom.
IPR032478. Staufen_C.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
PF16482. Staufen_C. 1 hit.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3UTC8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
SSAFALAVVA SVCAPPSSEP RPGGARLRLR HSASSLLWSV PFSSPSSLAS
60 70 80 90 100
SPPRRRPRPP APGRALGKQP ESIASTIELN ALCVKLERKP MYKPVDPHSR
110 120 130 140 150
MQSTYSYGMR GGAYPPRYFY PFPVPPLLYQ VELSVGGQQF NGKGKMRPPV
160 170 180 190 200
KHDAPARALR TLQSEPLPER LEVNGREAEE ENLNKSEISQ VFEIALKRNL
210 220 230 240 250
PVNFEVARES GPPHMKNFVT RVSVGEFVGE GEGKSKKISK KNAARAVLEQ
260 270 280 290 300
LRRLPPLPAV ERVKPRIKKK SQPTCKLQTA PDYGQGMNPI SRLAQIQQAK
310 320 330 340 350
KEKEPEYMLL TERGLPRRRE FVMQVKVGHH TAEGVGTNKK VAKRNAAENM
360 370 380 390 400
LEILGFKVPQ AQPAKPALKS EEKTPVKKPG DGRKVTFFEP SPGDENGTSN
410 420 430 440 450
KDEEFRMPYL SHQQLPAGIL PMVPEVAQAV GVSQGHHTKD FTRAAPNPAK
460 470 480 490 500
ATVTAMIARE LLYGGTSPTA ETILKSNISS GHVPHGPRTR PSEQLYYLSR
510 520 530 540 550
AQGFQVEYKD FPKNNKNECV SLINCSSQPP LVSHGIGKDV ESCHDMAALN
560 570
ILKLLSELDQ QSTEMPRTGN GPVSACGRC
Length:579
Mass (Da):63,571
Last modified:October 11, 2005 - v1
Checksum:i4F436741F80F281E
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK139532 mRNA. Translation: BAE24052.1.
RefSeqiNP_001103375.1. NM_001109905.2.
NP_001103376.1. NM_001109906.2.
NP_001278089.1. NM_001291160.1.
NP_035620.1. NM_011490.4.
UniGeneiMm.73276.

Genome annotation databases

GeneIDi20853.
KEGGimmu:20853.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK139532 mRNA. Translation: BAE24052.1.
RefSeqiNP_001103375.1. NM_001109905.2.
NP_001103376.1. NM_001109906.2.
NP_001278089.1. NM_001291160.1.
NP_035620.1. NM_011490.4.
UniGeneiMm.73276.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000104861.

Proteomic databases

PaxDbiQ3UTC8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20853.
KEGGimmu:20853.

Organism-specific databases

CTDi6780.
MGIiMGI:1338864. Stau1.

Phylogenomic databases

eggNOGiKOG3732. Eukaryota.
ENOG410XSCK. LUCA.
HOVERGENiHBG005013.
KOiK17597.

Miscellaneous databases

ChiTaRSiStau1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ3UTC8.

Family and domain databases

Gene3Di3.30.160.20. 3 hits.
InterProiIPR014720. dsRBD_dom.
IPR032478. Staufen_C.
[Graphical view]
PfamiPF00035. dsrm. 2 hits.
PF16482. Staufen_C. 1 hit.
[Graphical view]
SMARTiSM00358. DSRM. 2 hits.
[Graphical view]
PROSITEiPS50137. DS_RBD. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: EggImported.

Entry informationi

Entry nameiQ3UTC8_MOUSE
AccessioniPrimary (citable) accession number: Q3UTC8
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 16, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.