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Q3UT27 (Q3UT27_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Abcb5 MGI 1924956
OrganismMus musculus (Mouse) EMBL BAE24153.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length417 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q3UT27 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 96D99A88FC0FE958

FASTA41745,956
        10         20         30         40         50         60 
MGIGLQTKFN TLVGEKGAQM SGGQKQRIAI ARALVRNPKI LILDEATSAL DTESESLVQT 

        70         80         90        100        110        120 
ALEKASKGRT TIVVAHRLST IRGADLIVTM KDGMVVEKGT HAELMAKQGL YYSLAMAQDI 

       130        140        150        160        170        180 
KKVDEQMESR TCSTAGNASY GSLCDVNSAK APCTDQLEEA VHHQKTSLPE VSLLKIFKLS 

       190        200        210        220        230        240 
KSEWPFVVLG TLASALNGSV HPVFSIIFGK LVTMFEDKNK ATLKQDAELY SMMLVVLGIV 

       250        260        270        280        290        300 
ALVTYLMQGL FYGRAEENLA MRLRHSAFKA MLYQAATSRL GIVTQDVSNM SLSILISFIY 

       310        320        330        340        350        360 
GWEMTLLILS FAPVLAVTGM IQTAAMAGFA NRDKQALKRA GKIATEAVEN IRTVVSLTRE 

       370        380        390        400        410 
RAFEQMYEET LQTQHRPAHP NFSCDFTKRK SSANTTKKYR FPRNHLILSE GTESTYF 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24153.1.
Tissue: Egg EMBL BAE24153.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK139832 mRNA. Translation: BAE24153.1.
RefSeqNP_084237.1. NM_029961.2.
UniGeneMm.261496.

3D structure databases

ProteinModelPortalQ3UT27.
SMRQ3UT27. Positions 5-118.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000098544.

PTM databases

PhosphoSiteQ3UT27.

Proteomic databases

PRIDEQ3UT27.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID77706.
KEGGmmu:77706.
UCSCuc007pii.1. mouse.

Organism-specific databases

CTD340273.
MGIMGI:1924956. Abcb5.

Phylogenomic databases

InParanoidQ3UT27.
KOK05660.

Gene expression databases

BgeeQ3UT27.
GenevestigatorQ3UT27.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
InterProIPR011527. ABC1_TM_dom.
IPR003439. ABC_transporter-like.
IPR001140. ABC_transptr_TM_dom.
IPR027417. P-loop_NTPase.
[Graphical view]
PfamPF00664. ABC_membrane. 2 hits.
PF00005. ABC_tran. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
SSF90123. SSF90123. 1 hit.
PROSITEPS50929. ABC_TM1F. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio347405.
SOURCESearch...

Entry information

Entry nameQ3UT27_MOUSE
AccessionPrimary (citable) accession number: Q3UT27
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 16, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)