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Q3URZ9 (Q3URZ9_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Cspg4 MGI 2153093
OrganismMus musculus (Mouse) EMBL BAE24538.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length825 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAE24538.1

Sequences

Sequence LengthMass (Da)Tools
Q3URZ9 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 93177CEABF3EB351

FASTA82588,510
        10         20         30         40         50         60 
RGTDNDSGPE DLVYTIEQPS NGRIALRVAP DTEVHRFTQA QLDSGLVLFS HRGALEGGFH 

        70         80         90        100        110        120 
FDLSDGAHTS PGHFFRVVAQ KQALLSLEGT RKLTVCPESV QPLSSQSLSA SSSTGADPRH 

       130        140        150        160        170        180 
LLYRVVRGPQ LGRLLHAQQG SAEEVLVNFT QAEVNAGNIL YEHEMSSEPF WEAHDTIGLL 

       190        200        210        220        230        240 
LSSPPARDLA ATLAVMVSFD AACPQRPSRL WKNKGLWVPE GQRAKITVAA LDAANLLASV 

       250        260        270        280        290        300 
PASQRSRHDV LFQVTQFPTR GQLLVSEEPL HARRPYFLQS ELAAGQLVYA HGGGGTQQDG 

       310        320        330        340        350        360 
FRFRAHLQGP TGTSVAGPQT SEAFVITVRD VNERPPQPQA SIPLRVTRGS RAPVSRAQLS 

       370        380        390        400        410        420 
VVDPDSAPGE IEYEVQRAPH NGFLSLAGDN TGPVTHFTQA DVDAGRLAFV ANGSSVAGVF 

       430        440        450        460        470        480 
QLSMSDGASP PIPMSLAVDV LPSTIEVQLR APLEVPQALG RTSLSRQQLQ VISDREEPDV 

       490        500        510        520        530        540 
AYRLTQGPLY GQLLVGGQPA SAFSQLQVDQ GDVVFVFTNF SSSQDHFKVV ALARGVNASA 

       550        560        570        580        590        600 
TVNVTVQALL HVWAGGPWPQ GTTLRLDPTV LDASELANRT GSMPHFRLLA GPRYGRVVRV 

       610        620        630        640        650        660 
SQGRTESRSN QLVEHFTQGD LEEGQLGLEV GKPEGRSTGP AGDRLTLELW AKGVPPAVAL 

       670        680        690        700        710        720 
LDFATEPYHA AKSYSVALLS VPEAVRTETE KPGRSVPTGQ PGQAASSPVP TAAKGGFLGF 

       730        740        750        760        770        780 
LEANMFSIII PVCLILLLLA LILPLLFYLR KRNKTGKHDV QVLTAKPRNG LAGDTETFRK 

       790        800        810        820 
VEPGQAIPLI TVPGQGPPPG GQPDPELLQF CRTPNPALRN GQYWV 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24538.1.
Tissue: Head EMBL BAE24538.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK140986 mRNA. Translation: BAE24538.1.
RefSeqNP_620570.2. NM_139001.2.
UniGeneMm.41329.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID121021.
KEGGmmu:121021.
UCSCuc009pto.1. mouse.

Organism-specific databases

CTD1464.
MGIMGI:2153093. Cspg4.

Phylogenomic databases

InParanoidQ3URZ9.
KOK08115.

Gene expression databases

GenevestigatorQ3URZ9.

Family and domain databases

ProtoNetSearch...

Other

NextBio369752.
SOURCESearch...

Entry information

Entry nameQ3URZ9_MOUSE
AccessionPrimary (citable) accession number: Q3URZ9
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 22, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)