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Q3URP1

- Q3URP1_MOUSE

UniProt

Q3URP1 - Q3URP1_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Setd1b

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 50 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:Setd1bImported
    Synonyms:BC035291Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:2652820. Setd1b.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: MGI

    PTM / Processingi

    Proteomic databases

    PaxDbiQ3URP1.
    PRIDEiQ3URP1.

    Expressioni

    Gene expression databases

    GenevestigatoriQ3URP1.

    Interactioni

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000098297.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3URP1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG147382.
    InParanoidiQ3URP1.
    KOiK11422.

    Family and domain databases

    Gene3Di3.30.70.330. 2 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    PfamiPF00076. RRM_1. 1 hit.
    [Graphical view]
    SMARTiSM00360. RRM. 1 hit.
    [Graphical view]
    PROSITEiPS50102. RRM. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q3URP1-1 [UniParc]FASTAAdd to Basket

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    TRVGLLSGVL WDVRLLGAEP PPPAASRAAA AAAAAAAAAR AAAARGPAAA    50
    KAASPPSRPP VRPPRPRLPR GTPCTGWRRR EAGARRGCWV NGMENSHPHH 100
    HHQQPPPQPG PSGERRNHHW RSYKLMIDPA LKKGHHKLYR YDGQHFSLAM 150
    SSNRPVEIVE DPRVVGIWTK NKELELSVPK FKIDEFYVGP VPPKQVTFAK 200
    LNDNVRENFL RDMCKKYGEV EEVEILYNPK TKKHLGIAKV VFATVRGAKE 250
    AVQHLHSTSV MGNIIHVELD TKGETRMRFY ELLVTGRYTP QTLPVGELDA 300
    ISPIVSETLQ LSDALKRLKD GSLSTGCGSG SSSVTPNSGG TPFSQDTAYS 350
    SCRLDTPNSY GQGTPITPRL GTPFSQDSSY SSRQPTPSYL FSQDPTATFK 400
    ARRHESKFTD AYNRRHEHHY VHNSAVAGAT APFRGSSDLS FGTVGSSGTP 450
    FKAQSQDATT FAHTPPPAQT ATASGFKSAF SPYQTPAPPF PPPPEEPTAT 500
    AAFGSRDSGE FRRAPAPPPL PPAEPPAKEK PGTPPGPPPP DSNSMELGGR 550
    PTFGWSPEPC DSPGTPTLES SPAGPEKPHD SLDSRIEMLL KEQRTKLPFL 600
    REQDSDTEIQ MEGSPISSSS SQLSPLSHFG TNSQPGFRGP SPPSSRPSST 650
    GLEDISPTPL PDSDEDEDLG LGLGPRPPPE PGPPDPMGLL GQTAEVDLDL 700
    AGDRTPTSER MDEVPPCLSV CLGLILSVLC STPDTFY 737
    Length:737
    Mass (Da):79,265
    Last modified:October 11, 2005 - v1
    Checksum:i17B49001E2D9E75B
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK141316 mRNA. Translation: BAE24647.1.
    RefSeqiNP_001035488.2. NM_001040398.2.
    UniGeneiMm.250391.

    Genome annotation databases

    GeneIDi208043.
    KEGGimmu:208043.
    UCSCiuc008znf.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK141316 mRNA. Translation: BAE24647.1 .
    RefSeqi NP_001035488.2. NM_001040398.2.
    UniGenei Mm.250391.

    3D structure databases

    ProteinModelPortali Q3URP1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000098297.

    Proteomic databases

    PaxDbi Q3URP1.
    PRIDEi Q3URP1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 208043.
    KEGGi mmu:208043.
    UCSCi uc008znf.1. mouse.

    Organism-specific databases

    CTDi 23067.
    MGIi MGI:2652820. Setd1b.

    Phylogenomic databases

    eggNOGi NOG147382.
    InParanoidi Q3URP1.
    KOi K11422.

    Miscellaneous databases

    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q3URP1.

    Family and domain databases

    Gene3Di 3.30.70.330. 2 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    Pfami PF00076. RRM_1. 1 hit.
    [Graphical view ]
    SMARTi SM00360. RRM. 1 hit.
    [Graphical view ]
    PROSITEi PS50102. RRM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    6. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.

    Entry informationi

    Entry nameiQ3URP1_MOUSE
    AccessioniPrimary (citable) accession number: Q3URP1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 50 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)