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Q3URP1 (Q3URP1_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Setd1b MGI 2652820
Synonyms:BC035291 MGI 2652820
OrganismMus musculus (Mouse) EMBL BAE24647.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length737 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAE24647.1

Sequences

Sequence LengthMass (Da)Tools
Q3URP1 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 17B49001E2D9E75B

FASTA73779,265
        10         20         30         40         50         60 
TRVGLLSGVL WDVRLLGAEP PPPAASRAAA AAAAAAAAAR AAAARGPAAA KAASPPSRPP 

        70         80         90        100        110        120 
VRPPRPRLPR GTPCTGWRRR EAGARRGCWV NGMENSHPHH HHQQPPPQPG PSGERRNHHW 

       130        140        150        160        170        180 
RSYKLMIDPA LKKGHHKLYR YDGQHFSLAM SSNRPVEIVE DPRVVGIWTK NKELELSVPK 

       190        200        210        220        230        240 
FKIDEFYVGP VPPKQVTFAK LNDNVRENFL RDMCKKYGEV EEVEILYNPK TKKHLGIAKV 

       250        260        270        280        290        300 
VFATVRGAKE AVQHLHSTSV MGNIIHVELD TKGETRMRFY ELLVTGRYTP QTLPVGELDA 

       310        320        330        340        350        360 
ISPIVSETLQ LSDALKRLKD GSLSTGCGSG SSSVTPNSGG TPFSQDTAYS SCRLDTPNSY 

       370        380        390        400        410        420 
GQGTPITPRL GTPFSQDSSY SSRQPTPSYL FSQDPTATFK ARRHESKFTD AYNRRHEHHY 

       430        440        450        460        470        480 
VHNSAVAGAT APFRGSSDLS FGTVGSSGTP FKAQSQDATT FAHTPPPAQT ATASGFKSAF 

       490        500        510        520        530        540 
SPYQTPAPPF PPPPEEPTAT AAFGSRDSGE FRRAPAPPPL PPAEPPAKEK PGTPPGPPPP 

       550        560        570        580        590        600 
DSNSMELGGR PTFGWSPEPC DSPGTPTLES SPAGPEKPHD SLDSRIEMLL KEQRTKLPFL 

       610        620        630        640        650        660 
REQDSDTEIQ MEGSPISSSS SQLSPLSHFG TNSQPGFRGP SPPSSRPSST GLEDISPTPL 

       670        680        690        700        710        720 
PDSDEDEDLG LGLGPRPPPE PGPPDPMGLL GQTAEVDLDL AGDRTPTSER MDEVPPCLSV 

       730 
CLGLILSVLC STPDTFY 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE24647.1.
Tissue: Whole body EMBL BAE24647.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK141316 mRNA. Translation: BAE24647.1.
RefSeqNP_001035488.2. NM_001040398.2.
UniGeneMm.250391.

3D structure databases

ProteinModelPortalQ3URP1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000098297.

Proteomic databases

PaxDbQ3URP1.
PRIDEQ3URP1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID208043.
KEGGmmu:208043.
UCSCuc008znf.1. mouse.

Organism-specific databases

CTD23067.
MGIMGI:2652820. Setd1b.

Phylogenomic databases

eggNOGNOG147382.
InParanoidQ3URP1.
KOK11422.

Gene expression databases

GenevestigatorQ3URP1.

Family and domain databases

Gene3D3.30.70.330. 2 hits.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTSM00360. RRM. 1 hit.
[Graphical view]
PROSITEPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ3URP1_MOUSE
AccessionPrimary (citable) accession number: Q3URP1
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 22, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)