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Q3URP1

- Q3URP1_MOUSE

UniProt

Q3URP1 - Q3URP1_MOUSE

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Protein
Submitted name: Putative uncharacterized protein
Gene
Setd1b, BC035291
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
  2. nucleotide binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Setd1bImported
Synonyms:BC035291Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2652820. Setd1b.

PTM / Processingi

Proteomic databases

PaxDbiQ3URP1.
PRIDEiQ3URP1.

Expressioni

Gene expression databases

GenevestigatoriQ3URP1.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000098297.

Structurei

3D structure databases

ProteinModelPortaliQ3URP1.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG147382.
InParanoidiQ3URP1.
KOiK11422.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3URP1-1 [UniParc]FASTAAdd to Basket

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TRVGLLSGVL WDVRLLGAEP PPPAASRAAA AAAAAAAAAR AAAARGPAAA    50
KAASPPSRPP VRPPRPRLPR GTPCTGWRRR EAGARRGCWV NGMENSHPHH 100
HHQQPPPQPG PSGERRNHHW RSYKLMIDPA LKKGHHKLYR YDGQHFSLAM 150
SSNRPVEIVE DPRVVGIWTK NKELELSVPK FKIDEFYVGP VPPKQVTFAK 200
LNDNVRENFL RDMCKKYGEV EEVEILYNPK TKKHLGIAKV VFATVRGAKE 250
AVQHLHSTSV MGNIIHVELD TKGETRMRFY ELLVTGRYTP QTLPVGELDA 300
ISPIVSETLQ LSDALKRLKD GSLSTGCGSG SSSVTPNSGG TPFSQDTAYS 350
SCRLDTPNSY GQGTPITPRL GTPFSQDSSY SSRQPTPSYL FSQDPTATFK 400
ARRHESKFTD AYNRRHEHHY VHNSAVAGAT APFRGSSDLS FGTVGSSGTP 450
FKAQSQDATT FAHTPPPAQT ATASGFKSAF SPYQTPAPPF PPPPEEPTAT 500
AAFGSRDSGE FRRAPAPPPL PPAEPPAKEK PGTPPGPPPP DSNSMELGGR 550
PTFGWSPEPC DSPGTPTLES SPAGPEKPHD SLDSRIEMLL KEQRTKLPFL 600
REQDSDTEIQ MEGSPISSSS SQLSPLSHFG TNSQPGFRGP SPPSSRPSST 650
GLEDISPTPL PDSDEDEDLG LGLGPRPPPE PGPPDPMGLL GQTAEVDLDL 700
AGDRTPTSER MDEVPPCLSV CLGLILSVLC STPDTFY 737
Length:737
Mass (Da):79,265
Last modified:October 11, 2005 - v1
Checksum:i17B49001E2D9E75B
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK141316 mRNA. Translation: BAE24647.1.
RefSeqiNP_001035488.2. NM_001040398.2.
UniGeneiMm.250391.

Genome annotation databases

GeneIDi208043.
KEGGimmu:208043.
UCSCiuc008znf.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK141316 mRNA. Translation: BAE24647.1 .
RefSeqi NP_001035488.2. NM_001040398.2.
UniGenei Mm.250391.

3D structure databases

ProteinModelPortali Q3URP1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000098297.

Proteomic databases

PaxDbi Q3URP1.
PRIDEi Q3URP1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 208043.
KEGGi mmu:208043.
UCSCi uc008znf.1. mouse.

Organism-specific databases

CTDi 23067.
MGIi MGI:2652820. Setd1b.

Phylogenomic databases

eggNOGi NOG147382.
InParanoidi Q3URP1.
KOi K11422.

Miscellaneous databases

SOURCEi Search...

Gene expression databases

Genevestigatori Q3URP1.

Family and domain databases

Gene3Di 3.30.70.330. 2 hits.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view ]
Pfami PF00076. RRM_1. 1 hit.
[Graphical view ]
SMARTi SM00360. RRM. 1 hit.
[Graphical view ]
PROSITEi PS50102. RRM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.

Entry informationi

Entry nameiQ3URP1_MOUSE
AccessioniPrimary (citable) accession number: Q3URP1
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 22, 2014
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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