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Q3UQI9

- F188B_MOUSE

UniProt

Q3UQI9 - F188B_MOUSE

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Protein

Protein FAM188B

Gene
Fam188b
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM188B
Gene namesi
Name:Fam188b
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 6

Organism-specific databases

MGIiMGI:3583959. Fam188b.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 744744Protein FAM188BPRO_0000320591Add
BLAST

Proteomic databases

PaxDbiQ3UQI9.
PRIDEiQ3UQI9.

PTM databases

PhosphoSiteiQ3UQI9.

Expressioni

Gene expression databases

BgeeiQ3UQI9.
CleanExiMM_C330043M08RIK.
GenevestigatoriQ3UQI9.

Interactioni

Protein-protein interaction databases

BioGridi236942. 1 interaction.

Family & Domainsi

Sequence similaritiesi

Belongs to the FAM188 family.

Phylogenomic databases

eggNOGiNOG282176.
GeneTreeiENSGT00530000063283.
HOGENOMiHOG000111604.
InParanoidiQ3UQI9.
OMAiNWNGSDP.
OrthoDBiEOG7GJ6CM.
PhylomeDBiQ3UQI9.
TreeFamiTF323996.

Family and domain databases

InterProiIPR025257. DUF4205.
[Graphical view]
PfamiPF13898. DUF4205. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q3UQI9-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MDSLYVEEVA ASLVREFLSR KGLNKTFVTM DQERPRCELS INSRNDLRKV    50
LHLEFLYKEN KAKEKPLRTN LELITRYFLD NVGNTDNSES QEVPIPAIPV 100
PKKNNKLPLR HSETTLVNIY DLSDEDTGRR TSWSEAGKAR HDSLDGDILG 150
NFVSSKKPSH KSKAAHVDLG DSLPLVPAWE KVDQLHSSEP GIDVKKTMER 200
TRPKSGLIVR GMMAGPVASS PQDSFRKRSL RRSSALSRKL QTPEEIQQQS 250
EPFVHTPAYL GPQEVPDSSS DSVSRSPLGQ LNELSIEKPN VTSSSQGLSQ 300
RDRPRLRSVS EDSPLGYSHT EGNSRMAQDQ LERAFKRQGV QPPSLRKNQL 350
VSDRTDDKPD ALQLEDVEDE LIKEDIVLFP PPSMLKLQTV SKPIDLSLAK 400
EIKTLLFGST FCCFSEEWKL QNFSFNDIAS LKYGIVQNKG GPCGVLAAVQ 450
GCVLQKLLFE GDNRTNSNLR LQPSDAQRTR CLALAIADIL WRAGGKEQAV 500
VALASGTPHF SPTGKYKADG VLETLTLYSL TSSEDLVTFI QQSVHQFEAG 550
PYGCILLTLS AILSRSLELV RQDFDVPTSH LIGAHGYCTQ ELVNLLLTGR 600
AVSNVFNDVV ELDSGDGNIT LLRGIEARSD IGFLSLFEHY NVCQVGCFLK 650
TPRFPIWVVC SESHFSILFS LQPELLCDWR SERLFDLYYY DGLANQQEEI 700
RLTVDTTKTA PADSCSDLVP PLELCIRTKW KGASVNWNGS DPIL 744
Length:744
Mass (Da):82,937
Last modified:October 11, 2005 - v1
Checksum:i5AF10D14154B3241
GO
Isoform 2 (identifier: Q3UQI9-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     506-744: Missing.

Note: No experimental confirmation available.

Show »
Length:505
Mass (Da):56,325
Checksum:i53793DA5EF2BF566
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei506 – 744239Missing in isoform 2. VSP_031672Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK082855 mRNA. Translation: BAC38655.1.
AK142385 mRNA. Translation: BAE25052.1.
CCDSiCCDS51782.1. [Q3UQI9-1]
RefSeqiNP_001136253.1. NM_001142781.1. [Q3UQI9-1]
NP_808551.2. NM_177883.4.
UniGeneiMm.268997.

Genome annotation databases

EnsembliENSMUST00000053094; ENSMUSP00000061221; ENSMUSG00000038022. [Q3UQI9-1]
GeneIDi330323.
KEGGimmu:330323.
UCSCiuc009cao.1. mouse. [Q3UQI9-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK082855 mRNA. Translation: BAC38655.1 .
AK142385 mRNA. Translation: BAE25052.1 .
CCDSi CCDS51782.1. [Q3UQI9-1 ]
RefSeqi NP_001136253.1. NM_001142781.1. [Q3UQI9-1 ]
NP_808551.2. NM_177883.4.
UniGenei Mm.268997.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 236942. 1 interaction.

PTM databases

PhosphoSitei Q3UQI9.

Proteomic databases

PaxDbi Q3UQI9.
PRIDEi Q3UQI9.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000053094 ; ENSMUSP00000061221 ; ENSMUSG00000038022 . [Q3UQI9-1 ]
GeneIDi 330323.
KEGGi mmu:330323.
UCSCi uc009cao.1. mouse. [Q3UQI9-1 ]

Organism-specific databases

CTDi 84182.
MGIi MGI:3583959. Fam188b.

Phylogenomic databases

eggNOGi NOG282176.
GeneTreei ENSGT00530000063283.
HOGENOMi HOG000111604.
InParanoidi Q3UQI9.
OMAi NWNGSDP.
OrthoDBi EOG7GJ6CM.
PhylomeDBi Q3UQI9.
TreeFami TF323996.

Miscellaneous databases

NextBioi 399298.
PROi Q3UQI9.
SOURCEi Search...

Gene expression databases

Bgeei Q3UQI9.
CleanExi MM_C330043M08RIK.
Genevestigatori Q3UQI9.

Family and domain databases

InterProi IPR025257. DUF4205.
[Graphical view ]
Pfami PF13898. DUF4205. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
    Strain: C57BL/6J.
    Tissue: Lung.

Entry informationi

Entry nameiF188B_MOUSE
AccessioniPrimary (citable) accession number: Q3UQI9
Secondary accession number(s): Q8C472
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: October 11, 2005
Last modified: July 9, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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