Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q3UQI9

- F188B_MOUSE

UniProt

Q3UQI9 - F188B_MOUSE

Protein

Protein FAM188B

Gene

Fam188b

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein FAM188B
    Gene namesi
    Name:Fam188b
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 6

    Organism-specific databases

    MGIiMGI:3583959. Fam188b.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 744744Protein FAM188BPRO_0000320591Add
    BLAST

    Proteomic databases

    PaxDbiQ3UQI9.
    PRIDEiQ3UQI9.

    PTM databases

    PhosphoSiteiQ3UQI9.

    Expressioni

    Gene expression databases

    BgeeiQ3UQI9.
    CleanExiMM_C330043M08RIK.
    GenevestigatoriQ3UQI9.

    Interactioni

    Protein-protein interaction databases

    BioGridi236942. 1 interaction.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the FAM188 family.Curated

    Phylogenomic databases

    eggNOGiNOG282176.
    GeneTreeiENSGT00530000063283.
    HOGENOMiHOG000111604.
    InParanoidiQ3UQI9.
    OMAiNWNGSDP.
    OrthoDBiEOG7GJ6CM.
    PhylomeDBiQ3UQI9.
    TreeFamiTF323996.

    Family and domain databases

    InterProiIPR025257. DUF4205.
    [Graphical view]
    PfamiPF13898. DUF4205. 1 hit.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q3UQI9-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MDSLYVEEVA ASLVREFLSR KGLNKTFVTM DQERPRCELS INSRNDLRKV    50
    LHLEFLYKEN KAKEKPLRTN LELITRYFLD NVGNTDNSES QEVPIPAIPV 100
    PKKNNKLPLR HSETTLVNIY DLSDEDTGRR TSWSEAGKAR HDSLDGDILG 150
    NFVSSKKPSH KSKAAHVDLG DSLPLVPAWE KVDQLHSSEP GIDVKKTMER 200
    TRPKSGLIVR GMMAGPVASS PQDSFRKRSL RRSSALSRKL QTPEEIQQQS 250
    EPFVHTPAYL GPQEVPDSSS DSVSRSPLGQ LNELSIEKPN VTSSSQGLSQ 300
    RDRPRLRSVS EDSPLGYSHT EGNSRMAQDQ LERAFKRQGV QPPSLRKNQL 350
    VSDRTDDKPD ALQLEDVEDE LIKEDIVLFP PPSMLKLQTV SKPIDLSLAK 400
    EIKTLLFGST FCCFSEEWKL QNFSFNDIAS LKYGIVQNKG GPCGVLAAVQ 450
    GCVLQKLLFE GDNRTNSNLR LQPSDAQRTR CLALAIADIL WRAGGKEQAV 500
    VALASGTPHF SPTGKYKADG VLETLTLYSL TSSEDLVTFI QQSVHQFEAG 550
    PYGCILLTLS AILSRSLELV RQDFDVPTSH LIGAHGYCTQ ELVNLLLTGR 600
    AVSNVFNDVV ELDSGDGNIT LLRGIEARSD IGFLSLFEHY NVCQVGCFLK 650
    TPRFPIWVVC SESHFSILFS LQPELLCDWR SERLFDLYYY DGLANQQEEI 700
    RLTVDTTKTA PADSCSDLVP PLELCIRTKW KGASVNWNGS DPIL 744
    Length:744
    Mass (Da):82,937
    Last modified:October 11, 2005 - v1
    Checksum:i5AF10D14154B3241
    GO
    Isoform 2 (identifier: Q3UQI9-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         506-744: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:505
    Mass (Da):56,325
    Checksum:i53793DA5EF2BF566
    GO

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei506 – 744239Missing in isoform 2. 1 PublicationVSP_031672Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK082855 mRNA. Translation: BAC38655.1.
    AK142385 mRNA. Translation: BAE25052.1.
    CCDSiCCDS51782.1. [Q3UQI9-1]
    RefSeqiNP_001136253.1. NM_001142781.1. [Q3UQI9-1]
    NP_808551.2. NM_177883.4.
    UniGeneiMm.268997.

    Genome annotation databases

    EnsembliENSMUST00000053094; ENSMUSP00000061221; ENSMUSG00000038022. [Q3UQI9-1]
    GeneIDi330323.
    KEGGimmu:330323.
    UCSCiuc009cao.1. mouse. [Q3UQI9-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK082855 mRNA. Translation: BAC38655.1 .
    AK142385 mRNA. Translation: BAE25052.1 .
    CCDSi CCDS51782.1. [Q3UQI9-1 ]
    RefSeqi NP_001136253.1. NM_001142781.1. [Q3UQI9-1 ]
    NP_808551.2. NM_177883.4.
    UniGenei Mm.268997.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 236942. 1 interaction.

    PTM databases

    PhosphoSitei Q3UQI9.

    Proteomic databases

    PaxDbi Q3UQI9.
    PRIDEi Q3UQI9.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000053094 ; ENSMUSP00000061221 ; ENSMUSG00000038022 . [Q3UQI9-1 ]
    GeneIDi 330323.
    KEGGi mmu:330323.
    UCSCi uc009cao.1. mouse. [Q3UQI9-1 ]

    Organism-specific databases

    CTDi 84182.
    MGIi MGI:3583959. Fam188b.

    Phylogenomic databases

    eggNOGi NOG282176.
    GeneTreei ENSGT00530000063283.
    HOGENOMi HOG000111604.
    InParanoidi Q3UQI9.
    OMAi NWNGSDP.
    OrthoDBi EOG7GJ6CM.
    PhylomeDBi Q3UQI9.
    TreeFami TF323996.

    Miscellaneous databases

    NextBioi 399298.
    PROi Q3UQI9.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q3UQI9.
    CleanExi MM_C330043M08RIK.
    Genevestigatori Q3UQI9.

    Family and domain databases

    InterProi IPR025257. DUF4205.
    [Graphical view ]
    Pfami PF13898. DUF4205. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
      Strain: C57BL/6J.
      Tissue: Lung.

    Entry informationi

    Entry nameiF188B_MOUSE
    AccessioniPrimary (citable) accession number: Q3UQI9
    Secondary accession number(s): Q8C472
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 26, 2008
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3