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Q3UN87

- Q3UN87_MOUSE

UniProt

Q3UN87 - Q3UN87_MOUSE

Protein

Small nuclear ribonucleoprotein-associated protein

Gene

Snrpn

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 73 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. response to hormone Source: Ensembl

    Keywords - Molecular functioni

    RibonucleoproteinUniRule annotation

    Keywords - Ligandi

    RNA-bindingUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Small nuclear ribonucleoprotein-associated proteinUniRule annotation
    Gene namesi
    Name:SnrpnImported
    Synonyms:SnurfImported
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:98347. Snrpn.

    Subcellular locationi

    Nucleus UniRule annotation

    GO - Cellular componenti

    1. nucleus Source: MGI
    2. U1 snRNP Source: Ensembl
    3. U2 snRNP Source: Ensembl

    Keywords - Cellular componenti

    NucleusUniRule annotation

    Expressioni

    Gene expression databases

    GenevestigatoriQ3UN87.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the snRNP SmB/SmN family.UniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00670000098029.
    HOVERGENiHBG001019.
    InParanoidiQ3UN87.
    KOiK11100.
    OMAiHHTFICS.

    Family and domain databases

    InterProiIPR010920. LSM_dom.
    IPR001163. Ribonucl_LSM.
    IPR006649. Ribonucl_LSM_euk/arc.
    IPR017131. snRNP-assoc_SmB/SmN.
    [Graphical view]
    PfamiPF01423. LSM. 1 hit.
    [Graphical view]
    PIRSFiPIRSF037187. snRNP_SmB/SmN. 1 hit.
    SMARTiSM00651. Sm. 1 hit.
    [Graphical view]
    SUPFAMiSSF50182. SSF50182. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q3UN87-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK    50
    IKPKNAKQPE REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA 100
    AGGPGVGRAA GRGVPAGVPI PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV 150
    AAAAVAATAS IAGAPTQYPP GRGTPPPPVG RATPPPGIMA PPPGMRPPMG 200
    PPIGLPPARG TPIGMPPPGM RPPPPGIRGP PPPGMRPPRP 240
    Length:240
    Mass (Da):24,614
    Last modified:October 11, 2005 - v1
    Checksum:i9A176D043561474C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    S40304 mRNA. Translation: AAA09579.1.
    AK144386 mRNA. Translation: BAE25860.1.
    RefSeqiNP_001076430.1. NM_001082961.1.
    NP_001076431.1. NM_001082962.1.
    NP_038698.1. NM_013670.3.
    UniGeneiMm.274995.

    Genome annotation databases

    GeneIDi20646.
    KEGGimmu:20646.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    S40304 mRNA. Translation: AAA09579.1 .
    AK144386 mRNA. Translation: BAE25860.1 .
    RefSeqi NP_001076430.1. NM_001082961.1.
    NP_001076431.1. NM_001082962.1.
    NP_038698.1. NM_013670.3.
    UniGenei Mm.274995.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 20646.
    KEGGi mmu:20646.

    Organism-specific databases

    CTDi 6638.
    MGIi MGI:98347. Snrpn.

    Phylogenomic databases

    GeneTreei ENSGT00670000098029.
    HOVERGENi HBG001019.
    InParanoidi Q3UN87.
    KOi K11100.
    OMAi HHTFICS.

    Miscellaneous databases

    ChiTaRSi SNRPN. mouse.
    NextBioi 299055.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q3UN87.

    Family and domain databases

    InterProi IPR010920. LSM_dom.
    IPR001163. Ribonucl_LSM.
    IPR006649. Ribonucl_LSM_euk/arc.
    IPR017131. snRNP-assoc_SmB/SmN.
    [Graphical view ]
    Pfami PF01423. LSM. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF037187. snRNP_SmB/SmN. 1 hit.
    SMARTi SM00651. Sm. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50182. SSF50182. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The intronless mouse gene for the tissue specific splicing protein SmN is a processed pseudogene containing a stop codon after thirty-one amino acids."
      Grimaldi K., Gerrelli D., Sharpe N.G., Lund T., Latchman D.S.
      DNA Seq. 2:241-246(1992) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    3. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    4. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    5. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    7. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    8. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.
    9. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal cordImported.

    Entry informationi

    Entry nameiQ3UN87_MOUSE
    AccessioniPrimary (citable) accession number: Q3UN87
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 73 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)