Q3UN87 (Q3UN87_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Small nuclear ribonucleoprotein-associated protein PIRNR PIRNR037187

Gene names

Name:	Snrpn MGI 98347
Synonyms:	Snurf MGI 1891236

Organism

Mus musculus (Mouse)

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	240 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Nucleus By similarity PIRNR PIRNR037187.
Sequence similarities	Belongs to the snRNP SmB/SmN family. PIRNR PIRNR037187

Ontologies

Keywords
Cellular component	Nucleus PIRNR PIRNR037187
Ligand	RNA-binding PIRNR PIRNR037187
Molecular function	Ribonucleoprotein PIRNR PIRNR037187
Gene Ontology (GO)
Biological_process	response to hormone stimulus Inferred from electronic annotation. Source: Compara
Cellular_component	U1 snRNP Inferred from electronic annotation. Source: Compara U2 snRNP Inferred from electronic annotation. Source: Compara nucleus Traceable author statement PubMed 10318933. Source: MGI
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3UN87 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: 9A176D043561474C	FASTA	240	24,614
	10 20 30 40 50 60 MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK IKPKNAKQPE 70 80 90 100 110 120 REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA AGGPGVGRAA GRGVPAGVPI 130 140 150 160 170 180 PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV AAAAVAATAS IAGAPTQYPP GRGTPPPPVG 190 200 210 220 230 240 RATPPPGIMA PPPGMRPPMG PPIGLPPARG TPIGMPPPGM RPPPPGIRGP PPPGMRPPRP

References

[1]	"The intronless mouse gene for the tissue specific splicing protein SmN is a processed pseudogene containing a stop codon after thirty-one amino acids." Grimaldi K., Gerrelli D., Sharpe N.G., Lund T., Latchman D.S. DNA Seq. 2:241-246(1992) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"High-efficiency full-length cDNA cloning." Carninci P., Hayashizaki Y. Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
[3]	"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes." Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y. Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
[4]	"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer." Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y. Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
[5]	"Functional annotation of a full-length mouse cDNA collection." The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Nature 409:685-690(2001) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
[6]	"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team Nature 420:563-573(2002) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
[7]	Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y. Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
[8]	"The Transcriptional Landscape of the Mammalian Genome." The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) Science 309:1559-1563(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
[9]	"Antisense Transcription in the Mammalian Transcriptome." RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE25860.1. Tissue: Spinal cord EMBL BAE25860.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	S40304 mRNA. Translation: AAA09579.1. AK144386 mRNA. Translation: BAE25860.1.
IPI	IPI00128699.
RefSeq	NP_001076430.1. NM_001082961.1. NP_001076431.1. NM_001082962.1. NP_038698.1. NM_013670.3.
UniGene	Mm.274995.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	20646.
KEGG	mmu:20646.
UCSC	uc008mij.1. mouse.
Organism-specific databases
CTD	6638.
MGI	MGI:98347. Snrpn.
Phylogenomic databases
GeneTree	ENSGT00670000098029.
HOVERGEN	HBG001019.
InParanoid	Q3UN87.
KO	K11100.
OMA	HHTFICS.
Gene expression databases
Genevestigator	Q3UN87.
Family and domain databases
InterPro	IPR010920. LSM_dom. IPR001163. Ribonucl_LSM. IPR006649. Ribonucl_LSM_euk/arc. IPR017131. snRNP-assoc_SmB/SmN. [Graphical view]
Pfam	PF01423. LSM. 1 hit. [Graphical view]
PIRSF	PIRSF037187. snRNP_SmB/SmN. 1 hit.
SMART	SM00651. Sm. 1 hit. [Graphical view]
SUPFAM	SSF50182. Sm_like_riboprot. 1 hit.
ProtoNet	Search...
Other
ChiTaRS	SNRPN. mouse.
NextBio	299055.
SOURCE	Search...

Entry information

Entry name

Q3UN87_MOUSE

Accession

Primary (citable) accession number: Q3UN87

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	May 1, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)