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Protein

Small nuclear ribonucleoprotein-associated protein

Gene

Snrpn

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

RibonucleoproteinUniRule annotation

Keywords - Ligandi

RNA-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Small nuclear ribonucleoprotein-associated proteinUniRule annotation
Gene namesi
Name:SnrpnImported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98347. Snrpn.

Subcellular locationi

  • Nucleus UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Expressioni

Gene expression databases

BgeeiENSMUSG00000000948.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000055941.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini7 – 82SmInterPro annotationAdd BLAST76

Sequence similaritiesi

Belongs to the snRNP SmB/SmN family.UniRule annotation

Phylogenomic databases

eggNOGiKOG3168. Eukaryota.
COG1958. LUCA.
HOVERGENiHBG001019.
KOiK11100.
OMAiHHTFICS.
OrthoDBiEOG091G0Y7H.

Family and domain databases

InterProiIPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
IPR017131. snRNP-assoc_SmB/SmN.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
PIRSFiPIRSF037187. snRNP_SmB/SmN. 1 hit.
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3UN87-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK
60 70 80 90 100
IKPKNAKQPE REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA
110 120 130 140 150
AGGPGVGRAA GRGVPAGVPI PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV
160 170 180 190 200
AAAAVAATAS IAGAPTQYPP GRGTPPPPVG RATPPPGIMA PPPGMRPPMG
210 220 230 240
PPIGLPPARG TPIGMPPPGM RPPPPGIRGP PPPGMRPPRP
Length:240
Mass (Da):24,614
Last modified:October 11, 2005 - v1
Checksum:i9A176D043561474C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S40304 mRNA. Translation: AAA09579.1.
AK144386 mRNA. Translation: BAE25860.1.
RefSeqiNP_001076430.1. NM_001082961.1.
NP_001076431.1. NM_001082962.1.
NP_038698.1. NM_013670.3.
UniGeneiMm.274995.

Genome annotation databases

GeneIDi20646.
KEGGimmu:20646.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S40304 mRNA. Translation: AAA09579.1.
AK144386 mRNA. Translation: BAE25860.1.
RefSeqiNP_001076430.1. NM_001082961.1.
NP_001076431.1. NM_001082962.1.
NP_038698.1. NM_013670.3.
UniGeneiMm.274995.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000055941.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20646.
KEGGimmu:20646.

Organism-specific databases

CTDi6638.
MGIiMGI:98347. Snrpn.

Phylogenomic databases

eggNOGiKOG3168. Eukaryota.
COG1958. LUCA.
HOVERGENiHBG001019.
KOiK11100.
OMAiHHTFICS.
OrthoDBiEOG091G0Y7H.

Miscellaneous databases

ChiTaRSiSnrpn. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000000948.

Family and domain databases

InterProiIPR010920. LSM_dom.
IPR001163. LSM_dom_euk/arc.
IPR017131. snRNP-assoc_SmB/SmN.
[Graphical view]
PfamiPF01423. LSM. 1 hit.
[Graphical view]
PIRSFiPIRSF037187. snRNP_SmB/SmN. 1 hit.
SMARTiSM00651. Sm. 1 hit.
[Graphical view]
SUPFAMiSSF50182. SSF50182. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ3UN87_MOUSE
AccessioniPrimary (citable) accession number: Q3UN87
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 2, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.