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Protein

H/ACA ribonucleoprotein complex non-core subunit NAF1

Gene

Naf1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

RNA-binding protein required for the maturation of box H/ACA snoRNPs complex and ribosome biogenesis. During assembly of the H/ACA snoRNPs complex, it associates with the complex and disappears during maturation of the complex and is replaced by NOLA1/GAR1 to yield mature H/ACA snoRNPs complex. Probably competes with NOLA1/GAR1 for binding with DKC1/NOLA4 (By similarity).By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein

Keywords - Biological processi

Ribosome biogenesis, rRNA processing

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
H/ACA ribonucleoprotein complex non-core subunit NAF1
Gene namesi
Name:Naf1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Unplaced

Organism-specific databases

MGIiMGI:2682306. Naf1.

Subcellular locationi

  • Cytoplasm By similarity
  • Nucleus By similarity

  • Note: Shuttles between the cytoplasm and the nucleus. Absent from the nucleolus (By similarity).By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 489489H/ACA ribonucleoprotein complex non-core subunit NAF1PRO_0000315638Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1 – 11N-acetylmethionineBy similarity
Modified residuei308 – 3081PhosphoserineCombined sources

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ3UMQ8.
MaxQBiQ3UMQ8.
PRIDEiQ3UMQ8.

PTM databases

iPTMnetiQ3UMQ8.
PhosphoSiteiQ3UMQ8.

Expressioni

Gene expression databases

CleanExiMM_NAF1.

Interactioni

Subunit structurei

During assembly of the complex, component of the small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs (H/ACA snoRNPs) which contains NOLA2/NHP2, NOLA3/NOP10, NAF1 and DKC1/NOLA4. Interacts directly with DKC1/NOLA4 (By similarity).By similarity

Structurei

3D structure databases

ProteinModelPortaliQ3UMQ8.
SMRiQ3UMQ8. Positions 174-269.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi25 – 10581Pro-richAdd
BLAST
Compositional biasi110 – 14132Ser-richAdd
BLAST
Compositional biasi409 – 47769Pro-richAdd
BLAST

Sequence similaritiesi

Belongs to the NAF1 family.Curated

Phylogenomic databases

HOGENOMiHOG000214085.
HOVERGENiHBG108169.
InParanoidiQ3UMQ8.
KOiK14763.
PhylomeDBiQ3UMQ8.

Family and domain databases

InterProiIPR007504. H/ACA_rnp_Gar1/Naf1.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF04410. Gar1. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3UMQ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEVVEAAAQL QTLKFGGSGQ GSAAPQPPED RREAPPPGVQ PPPPAPSGRP
60 70 80 90 100
PPPPAPSSDP GGRPPPPPAP NWDAGGRPPP PPAPNSDPPP GGAWVTGRNA
110 120 130 140 150
AEPPPVLQAS DSSDSDSDSE TDSDSSSSSS SSSSSSSSCV SFPPVLSDGD
160 170 180 190 200
EDFQLEKENK NFPLKTKDEL LLNELPSVEE LTVILPEDIA LKPLGKVSSI
210 220 230 240 250
IEQLVIIESV TNIPPVNEDT VIFKSDRQAA GKIFEIFGPV AHPFYVLRFN
260 270 280 290 300
SSDHIESKGI KINDTMYFAP SMKDFTQYIF TEKLKQDRGS DASWKNDQEP
310 320 330 340 350
PPEVLDFSDD EKEKEAKQRK KSQIQGRKKL KSELNESGED FGEVHENWNA
360 370 380 390 400
YSSSEHSKGY HHREFSRGFA RGRYSRRSHG RPPPQQYYNS DHMASQESLG
410 420 430 440 450
FTPQRQDNPV MPHYPFPPPM FDMHNFPLPP PPPPPPPPPP SMGWAAPSMA
460 470 480
SHPVLNLPYS MPPPPLPPPP PPPPPSPGEN NSSHFGPYF
Length:489
Mass (Da):53,246
Last modified:January 15, 2008 - v2
Checksum:i2E752F90632375E8
GO

Sequence cautioni

The sequence BAE26040 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC116731 Genomic DNA. No translation available.
AK144735 mRNA. Translation: BAE26040.1. Different initiation.
BC027148 mRNA. Translation: AAH27148.1.
RefSeqiNP_001157036.1. NM_001163564.1.
UniGeneiMm.334561.

Genome annotation databases

GeneIDi234344.
KEGGimmu:234344.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC116731 Genomic DNA. No translation available.
AK144735 mRNA. Translation: BAE26040.1. Different initiation.
BC027148 mRNA. Translation: AAH27148.1.
RefSeqiNP_001157036.1. NM_001163564.1.
UniGeneiMm.334561.

3D structure databases

ProteinModelPortaliQ3UMQ8.
SMRiQ3UMQ8. Positions 174-269.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

iPTMnetiQ3UMQ8.
PhosphoSiteiQ3UMQ8.

Proteomic databases

EPDiQ3UMQ8.
MaxQBiQ3UMQ8.
PRIDEiQ3UMQ8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi234344.
KEGGimmu:234344.

Organism-specific databases

CTDi92345.
MGIiMGI:2682306. Naf1.

Phylogenomic databases

HOGENOMiHOG000214085.
HOVERGENiHBG108169.
InParanoidiQ3UMQ8.
KOiK14763.
PhylomeDBiQ3UMQ8.

Miscellaneous databases

PROiQ3UMQ8.
SOURCEiSearch...

Gene expression databases

CleanExiMM_NAF1.

Family and domain databases

InterProiIPR007504. H/ACA_rnp_Gar1/Naf1.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF04410. Gar1. 1 hit.
[Graphical view]
SUPFAMiSSF50447. SSF50447. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiNAF1_MOUSE
AccessioniPrimary (citable) accession number: Q3UMQ8
Secondary accession number(s): Q8R2W2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: January 15, 2008
Last modified: June 8, 2016
This is version 76 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.