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Q3ULL6

- Q3ULL6_MOUSE

UniProt

Q3ULL6 - Q3ULL6_MOUSE

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Protein
Submitted name:

Protein Upf3b

Gene

Upf3b

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. mRNA binding Source: Ensembl
  2. nucleotide binding Source: InterPro

GO - Biological processi

  1. positive regulation of translation Source: Ensembl
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_232353. Transport of Mature mRNA derived from an Intron-Containing Transcript.
REACT_240247. mRNA 3'-end processing.
REACT_260226. mRNA Splicing - Major Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Upf3bImported
Gene namesi
Name:Upf3bImported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome X

Organism-specific databases

MGIiMGI:1915384. Upf3b.

Subcellular locationi

GO - Cellular componenti

  1. cytoplasm Source: Ensembl
  2. exon-exon junction complex Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ3ULL6.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000075614.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000017146.
HOGENOMiHOG000230909.
HOVERGENiHBG059714.
KOiK14328.
OMAiYFEFFAN.
OrthoDBiEOG7M6D9K.
TreeFamiTF316034.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR005120. Nonsense_mediated_decay_UPF3.
IPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]
PfamiPF03467. Smg4_UPF3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3ULL6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL
60 70 80 90 100
SKVVIRRLPP TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN
110 120 130 140 150
FKNQEDILLF RDRFDGYVFL DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK
160 170 180 190 200
VGTIEDDPEY RKFLESYATD NEKMTSTPET LLEEIEAKNR ELIAKRTTPL
210 220 230 240 250
LSFLKNKQRM REEKREERRR REIERKRQRE EERRKWKEEE KRKRKDIEKL
260 270 280 290 300
KKIERIPERE KIRDEPKIKL LRKPEKGDEK ELDKRDKTKR LDKENLNEER
310 320 330 340 350
ASGHSYTLPR RSDVELKDEK PKRLDDEGVR DYRDRDRDYE RDQERMIRER
360 370 380 390 400
ERLKRQEEER RRQQQKERYE KEKAFKRKEE EMKREKEALR DKGKKSENTE
410 420 430 440 450
SICSLEKIEK KEEVVKRDRI RNKDRPAMQL YQPGARSRSR LCPADDSIKP
460 470
GDSPVDKKQE SGISHRKEGG EE
Length:472
Mass (Da):57,065
Last modified:October 11, 2005 - v1
Checksum:i352BB365348FB7DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL451076 Genomic DNA. No translation available.
AK145431 mRNA. Translation: BAE26432.1.
RefSeqiNP_080849.1. NM_026573.2.
UniGeneiMm.271160.

Genome annotation databases

EnsembliENSMUST00000076265; ENSMUSP00000075614; ENSMUSG00000036572.
GeneIDi68134.
KEGGimmu:68134.
UCSCiuc009sye.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL451076 Genomic DNA. No translation available.
AK145431 mRNA. Translation: BAE26432.1 .
RefSeqi NP_080849.1. NM_026573.2.
UniGenei Mm.271160.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000075614.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000076265 ; ENSMUSP00000075614 ; ENSMUSG00000036572 .
GeneIDi 68134.
KEGGi mmu:68134.
UCSCi uc009sye.1. mouse.

Organism-specific databases

CTDi 65109.
MGIi MGI:1915384. Upf3b.

Phylogenomic databases

GeneTreei ENSGT00390000017146.
HOGENOMi HOG000230909.
HOVERGENi HBG059714.
KOi K14328.
OMAi YFEFFAN.
OrthoDBi EOG7M6D9K.
TreeFami TF316034.

Enzyme and pathway databases

Reactomei REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).
REACT_232353. Transport of Mature mRNA derived from an Intron-Containing Transcript.
REACT_240247. mRNA 3'-end processing.
REACT_260226. mRNA Splicing - Major Pathway.

Miscellaneous databases

NextBioi 326500.
PROi Q3ULL6.
SOURCEi Search...

Gene expression databases

Genevestigatori Q3ULL6.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
InterProi IPR005120. Nonsense_mediated_decay_UPF3.
IPR012677. Nucleotide-bd_a/b_plait.
[Graphical view ]
Pfami PF03467. Smg4_UPF3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Whole bodyImported.
  9. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  10. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3ULL6_MOUSE
AccessioniPrimary (citable) accession number: Q3ULL6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 26, 2014
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3