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Q3ULL6 (Q3ULL6_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length472 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q3ULL6 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 352BB365348FB7DE

FASTA47257,065
        10         20         30         40         50         60 
MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL SKVVIRRLPP 

        70         80         90        100        110        120 
TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN FKNQEDILLF RDRFDGYVFL 

       130        140        150        160        170        180 
DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK VGTIEDDPEY RKFLESYATD NEKMTSTPET 

       190        200        210        220        230        240 
LLEEIEAKNR ELIAKRTTPL LSFLKNKQRM REEKREERRR REIERKRQRE EERRKWKEEE 

       250        260        270        280        290        300 
KRKRKDIEKL KKIERIPERE KIRDEPKIKL LRKPEKGDEK ELDKRDKTKR LDKENLNEER 

       310        320        330        340        350        360 
ASGHSYTLPR RSDVELKDEK PKRLDDEGVR DYRDRDRDYE RDQERMIRER ERLKRQEEER 

       370        380        390        400        410        420 
RRQQQKERYE KEKAFKRKEE EMKREKEALR DKGKKSENTE SICSLEKIEK KEEVVKRDRI 

       430        440        450        460        470 
RNKDRPAMQL YQPGARSRSR LCPADDSIKP GDSPVDKKQE SGISHRKEGG EE 

« Hide

References

« Hide 'large scale' references
[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE26432.1.
Tissue: Whole body EMBL BAE26432.1.
[9]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000075614.
[10]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000075614.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL451076 Genomic DNA. No translation available.
AK145431 mRNA. Translation: BAE26432.1.
RefSeqNP_080849.1. NM_026573.2.
UniGeneMm.271160.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000075614.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000076265; ENSMUSP00000075614; ENSMUSG00000036572.
GeneID68134.
KEGGmmu:68134.
UCSCuc009sye.1. mouse.

Organism-specific databases

CTD65109.
MGIMGI:1915384. Upf3b.

Phylogenomic databases

GeneTreeENSGT00390000017146.
HOGENOMHOG000230909.
HOVERGENHBG059714.
InParanoidQ3ULL6.
KOK14328.
OMAYFEFFAN.
OrthoDBEOG7M6D9K.
TreeFamTF316034.

Gene expression databases

GenevestigatorQ3ULL6.

Family and domain databases

Gene3D3.30.70.330. 1 hit.
InterProIPR005120. Nonsense_mediated_decay_UPF3.
IPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]
PfamPF03467. Smg4_UPF3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio326500.
PROQ3ULL6.
SOURCESearch...

Entry information

Entry nameQ3ULL6_MOUSE
AccessionPrimary (citable) accession number: Q3ULL6
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 19, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)