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Protein
Submitted name:

Protein Upf3b

Gene

Upf3b

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-MMU-109688. Cleavage of Growing Transcript in the Termination Region.
R-MMU-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-MMU-72163. mRNA Splicing - Major Pathway.
R-MMU-72187. mRNA 3'-end processing.
R-MMU-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Upf3bImported
Gene namesi
Name:Upf3bImported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome X

Organism-specific databases

MGIiMGI:1915384. Upf3b.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

BgeeiENSMUSG00000036572.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000075614.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini50 – 208Smg4_UPF3InterPro annotationAdd BLAST159

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili200 – 253Sequence analysisAdd BLAST54
Coiled coili336 – 399Sequence analysisAdd BLAST64

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1295. Eukaryota.
ENOG41122XD. LUCA.
GeneTreeiENSGT00390000017146.
HOGENOMiHOG000230909.
HOVERGENiHBG059714.
KOiK14328.
OMAiRCPEKER.
OrthoDBiEOG091G0JKF.
TreeFamiTF316034.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR005120. Nonsense_mediated_decay_UPF3.
IPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]
PfamiPF03467. Smg4_UPF3. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3ULL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL
60 70 80 90 100
SKVVIRRLPP TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN
110 120 130 140 150
FKNQEDILLF RDRFDGYVFL DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK
160 170 180 190 200
VGTIEDDPEY RKFLESYATD NEKMTSTPET LLEEIEAKNR ELIAKRTTPL
210 220 230 240 250
LSFLKNKQRM REEKREERRR REIERKRQRE EERRKWKEEE KRKRKDIEKL
260 270 280 290 300
KKIERIPERE KIRDEPKIKL LRKPEKGDEK ELDKRDKTKR LDKENLNEER
310 320 330 340 350
ASGHSYTLPR RSDVELKDEK PKRLDDEGVR DYRDRDRDYE RDQERMIRER
360 370 380 390 400
ERLKRQEEER RRQQQKERYE KEKAFKRKEE EMKREKEALR DKGKKSENTE
410 420 430 440 450
SICSLEKIEK KEEVVKRDRI RNKDRPAMQL YQPGARSRSR LCPADDSIKP
460 470
GDSPVDKKQE SGISHRKEGG EE
Length:472
Mass (Da):57,065
Last modified:October 11, 2005 - v1
Checksum:i352BB365348FB7DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL451076 Genomic DNA. No translation available.
AK145431 mRNA. Translation: BAE26432.1.
RefSeqiNP_080849.1. NM_026573.3.
UniGeneiMm.271160.

Genome annotation databases

EnsembliENSMUST00000076265; ENSMUSP00000075614; ENSMUSG00000036572.
GeneIDi68134.
KEGGimmu:68134.
UCSCiuc009sye.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL451076 Genomic DNA. No translation available.
AK145431 mRNA. Translation: BAE26432.1.
RefSeqiNP_080849.1. NM_026573.3.
UniGeneiMm.271160.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000075614.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000076265; ENSMUSP00000075614; ENSMUSG00000036572.
GeneIDi68134.
KEGGimmu:68134.
UCSCiuc009sye.1. mouse.

Organism-specific databases

CTDi65109.
MGIiMGI:1915384. Upf3b.

Phylogenomic databases

eggNOGiKOG1295. Eukaryota.
ENOG41122XD. LUCA.
GeneTreeiENSGT00390000017146.
HOGENOMiHOG000230909.
HOVERGENiHBG059714.
KOiK14328.
OMAiRCPEKER.
OrthoDBiEOG091G0JKF.
TreeFamiTF316034.

Enzyme and pathway databases

ReactomeiR-MMU-109688. Cleavage of Growing Transcript in the Termination Region.
R-MMU-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-MMU-72163. mRNA Splicing - Major Pathway.
R-MMU-72187. mRNA 3'-end processing.
R-MMU-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000036572.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR005120. Nonsense_mediated_decay_UPF3.
IPR012677. Nucleotide-bd_a/b_plait.
[Graphical view]
PfamiPF03467. Smg4_UPF3. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ3ULL6_MOUSE
AccessioniPrimary (citable) accession number: Q3ULL6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: October 5, 2016
This is version 105 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.