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Q3ULL6

- Q3ULL6_MOUSE

UniProt

Q3ULL6 - Q3ULL6_MOUSE

Protein
Submitted name:

Protein Upf3b

Gene

Upf3b

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. mRNA binding Source: Ensembl
    2. nucleotide binding Source: InterPro

    GO - Biological processi

    1. positive regulation of translation Source: Ensembl

    Enzyme and pathway databases

    ReactomeiREACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Upf3bImported
    Gene namesi
    Name:Upf3bImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome X

    Organism-specific databases

    MGIiMGI:1915384. Upf3b.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. exon-exon junction complex Source: Ensembl

    Expressioni

    Gene expression databases

    GenevestigatoriQ3ULL6.

    Interactioni

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000075614.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00390000017146.
    HOGENOMiHOG000230909.
    HOVERGENiHBG059714.
    InParanoidiQ3ULL6.
    KOiK14328.
    OMAiYFEFFAN.
    OrthoDBiEOG7M6D9K.
    TreeFamiTF316034.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    InterProiIPR005120. Nonsense_mediated_decay_UPF3.
    IPR012677. Nucleotide-bd_a/b_plait.
    [Graphical view]
    PfamiPF03467. Smg4_UPF3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3ULL6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKEEKDHRPK EKRVTLFTPQ GATGGCIGAT AEGAKGDDRQ DRNRDKKEAL    50
    SKVVIRRLPP TLTKEQLQEH LQPMPEHDYF EFFSNDTSLY PHMYARAYIN 100
    FKNQEDILLF RDRFDGYVFL DNKGQEYHAI VEFAPFQKAA KKKIKKRDTK 150
    VGTIEDDPEY RKFLESYATD NEKMTSTPET LLEEIEAKNR ELIAKRTTPL 200
    LSFLKNKQRM REEKREERRR REIERKRQRE EERRKWKEEE KRKRKDIEKL 250
    KKIERIPERE KIRDEPKIKL LRKPEKGDEK ELDKRDKTKR LDKENLNEER 300
    ASGHSYTLPR RSDVELKDEK PKRLDDEGVR DYRDRDRDYE RDQERMIRER 350
    ERLKRQEEER RRQQQKERYE KEKAFKRKEE EMKREKEALR DKGKKSENTE 400
    SICSLEKIEK KEEVVKRDRI RNKDRPAMQL YQPGARSRSR LCPADDSIKP 450
    GDSPVDKKQE SGISHRKEGG EE 472
    Length:472
    Mass (Da):57,065
    Last modified:October 11, 2005 - v1
    Checksum:i352BB365348FB7DE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL451076 Genomic DNA. No translation available.
    AK145431 mRNA. Translation: BAE26432.1.
    RefSeqiNP_080849.1. NM_026573.2.
    UniGeneiMm.271160.

    Genome annotation databases

    EnsembliENSMUST00000076265; ENSMUSP00000075614; ENSMUSG00000036572.
    GeneIDi68134.
    KEGGimmu:68134.
    UCSCiuc009sye.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL451076 Genomic DNA. No translation available.
    AK145431 mRNA. Translation: BAE26432.1 .
    RefSeqi NP_080849.1. NM_026573.2.
    UniGenei Mm.271160.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000075614.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000076265 ; ENSMUSP00000075614 ; ENSMUSG00000036572 .
    GeneIDi 68134.
    KEGGi mmu:68134.
    UCSCi uc009sye.1. mouse.

    Organism-specific databases

    CTDi 65109.
    MGIi MGI:1915384. Upf3b.

    Phylogenomic databases

    GeneTreei ENSGT00390000017146.
    HOGENOMi HOG000230909.
    HOVERGENi HBG059714.
    InParanoidi Q3ULL6.
    KOi K14328.
    OMAi YFEFFAN.
    OrthoDBi EOG7M6D9K.
    TreeFami TF316034.

    Enzyme and pathway databases

    Reactomei REACT_198528. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

    Miscellaneous databases

    NextBioi 326500.
    PROi Q3ULL6.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q3ULL6.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    InterProi IPR005120. Nonsense_mediated_decay_UPF3.
    IPR012677. Nucleotide-bd_a/b_plait.
    [Graphical view ]
    Pfami PF03467. Smg4_UPF3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    6. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Whole bodyImported.
    9. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    10. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ3ULL6_MOUSE
    AccessioniPrimary (citable) accession number: Q3ULL6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3