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Q3UIX3 (Q3UIX3_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative uncharacterized protein EMBL BAE27383.1
Gene names
Name:Pkp4 MGI 109281
OrganismMus musculus (Mouse) EMBL BAE27383.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length802 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue8021 EMBL BAE27383.1

Sequences

Sequence LengthMass (Da)Tools
Q3UIX3 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: BDB8094B9E3BC881

FASTA80288,125
        10         20         30         40         50         60 
MPAPEQGSLV EEGQPQTHQE AVSTGPGMEP ETTATTILAS VKEQELQFQR LTRELEVERQ 

        70         80         90        100        110        120 
IVASQLERCR LGAESPSIAS TSSTEKSFPW RSTDVPNPGV SKPRVSDTIH PNNYLIRTEP 

       130        140        150        160        170        180 
EQGTLYSPEQ TSLHERSLGN SRSSTQMNSY SDSGYQEAGS FHNSQTVNKA DSRQHPFTGS 

       190        200        210        220        230        240 
TSNHVVRTSR AEGQTLVQPS VANRAMRRVS SVPSRAQSPS YVTSTGVSPS RGSLRTSLGS 

       250        260        270        280        290        300 
GFGSPSVTDS RPLNPSAYSS STLPAQRAAS PYSQRPASPT AVRRVGSVTS RQTSNPNGPV 

       310        320        330        340        350        360 
PQYQTTTRVG SPLTLTDAQT RVASPSQGQV GSSSPKRSGM TAVPQHLGPS LQRTVHDMDQ 

       370        380        390        400        410        420 
FGQQQYDIYE RMVPPRPDSL TGLRSSYASQ HSQLGQELRS AVSPDLHITP IYEGRTYYSP 

       430        440        450        460        470        480 
VYRSPNHGTV ELQGSQTALY RTGSVGIGNL QRTSSQRSTL TYQRNNYALN TAATYAEPYR 

       490        500        510        520        530        540 
PVQYRVQECS YNRLQHTGPA DDGATRSPSI DSIQKDPSTL KGVIHCLQTS VVFWEFAWRD 

       550        560        570        580        590        600 
PELPEVIHML QHQFPSVQAN AAAYLQHLCF GDNKVKMEVY RLGGIKHLVD LLDHRVLEVQ 

       610        620        630        640        650        660 
KNACGALRNL VFGKSTDENK IAMKNVGGIP ALLRLLRKSI DAEVRELVTG VLWNLSSCDA 

       670        680        690        700        710        720 
VKMTIIRDAL STLTNTVIVP HSGWNNSSFD DDHKIKFQTS LVLRNTTGCL RNLSSAGEEA 

       730        740        750        760        770        780 
RKQMRSCEGL VDSLLYVIHT CVNTSDYDSK TVENCVCTLR NLSYRLELEV PQARLLGLNE 

       790        800 
LDDLLGKESP SKDSEPSCWG KK

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE27383.1.
Tissue: Amnion EMBL BAE27383.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK146720 mRNA. Translation: BAE27383.1.
IPIIPI00808275.
RefSeqNP_080637.1. NM_026361.2.
NP_780673.2. NM_175464.2.
UniGeneMm.260938.

3D structure databases

ProteinModelPortalQ3UIX3.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ3UIX3.

Proteomic databases

PRIDEQ3UIX3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID227937.
KEGGmmu:227937.
UCSCuc008jsz.1. mouse.

Organism-specific databases

CTD8502.
MGIMGI:109281. Pkp4.

Phylogenomic databases

HOVERGENHBG004284.

Gene expression databases

ArrayExpressQ3UIX3.
GenevestigatorQ3UIX3.

Family and domain databases

Gene3D1.25.10.10. 1 hit.
InterProIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR000225. Armadillo.
[Graphical view]
PfamPF00514. Arm. 2 hits.
[Graphical view]
SMARTSM00185. ARM. 4 hits.
[Graphical view]
SUPFAMSSF48371. ARM-type_fold. 1 hit.
PROSITEPS50176. ARM_REPEAT. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

ChiTaRSPKP4. mouse.
NextBio378870.
SOURCESearch...

Entry information

Entry nameQ3UIX3_MOUSE
AccessionPrimary (citable) accession number: Q3UIX3
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 3, 2013
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Sequence annotation·Sequences·References·Cross-refs·Entry info