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Protein
Submitted name:

Putative uncharacterized protein

Gene

Lamb1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Lamb1Imported
Synonyms:Lamb1-1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:96743. Lamb1.

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Proteomic databases

PaxDbiQ3UHL7.
PeptideAtlasiQ3UHL7.
PRIDEiQ3UHL7.

Expressioni

Gene expression databases

GenevisibleiQ3UHL7. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000002979.

Structurei

3D structure databases

ProteinModelPortaliQ3UHL7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini79 – 318240Laminin N-terminalInterPro annotationAdd
BLAST
Domaini319 – 38264Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini383 – 44563Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini446 – 50560Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini506 – 55752Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini558 – 60346Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini597 – 815219Laminin IV type BInterPro annotationAdd
BLAST
Domaini821 – 86848Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini869 – 91446Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini915 – 96450Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini965 – 102359Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini1024 – 107552Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini1076 – 113156Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini1132 – 117948Laminin EGF-likeInterPro annotationAdd
BLAST
Domaini1180 – 122647Laminin EGF-likeInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili1333 – 136028Sequence analysisAdd
BLAST
Coiled coili1506 – 156156Sequence analysisAdd
BLAST
Coiled coili1609 – 163628Sequence analysisAdd
BLAST
Coiled coili1640 – 171677Sequence analysisAdd
BLAST
Coiled coili1746 – 182277Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, Laminin EGF-like domainSAAS annotation, RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0994. Eukaryota.
ENOG410XPEG. LUCA.
HOVERGENiHBG052301.
KOiK05636.

Family and domain databases

InterProiIPR000742. EGF-like_dom.
IPR002049. Laminin_EGF.
IPR013015. Laminin_IV_B.
IPR008211. Laminin_N.
[Graphical view]
PfamiPF00053. Laminin_EGF. 13 hits.
PF00055. Laminin_N. 1 hit.
[Graphical view]
SMARTiSM00181. EGF. 10 hits.
SM00180. EGF_Lam. 13 hits.
SM00136. LamNT. 1 hit.
[Graphical view]
PROSITEiPS01248. EGF_LAM_1. 11 hits.
PS50027. EGF_LAM_2. 13 hits.
PS51116. LAMININ_IVB. 1 hit.
PS51117. LAMININ_NTER. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3UHL7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEGPLSSLPT FAFSPRYLSR KEDPKKRQAA CLLRPPSRAA SPRLRGLDMG
60 70 80 90 100
LLQVFAFGVL ALWGTRVCAQ EPEFSYGCAE GSCYTATGDL LIGRAQKLSV
110 120 130 140 150
TSTCGLHKPE PYCIVSHLQE DKKCFICDSR DPYHETLNPD SHLIENVVTT
160 170 180 190 200
FAPNRLKIWW QSENGVENVT IQLDLEAEFH FTHLIMTFKT FRPAAMLIER
210 220 230 240 250
SSDFGKAWGV YRYFAYDCES SFPGISTGPM KKVDDIICDS RYSDIEPSTE
260 270 280 290 300
GEVIFRALDP AFKIEDPYSP RIQNLLKITN LRIKFVKLHT LGDNLLDSRM
310 320 330 340 350
EIREKYYYAV YDMVVRGNCF CYGHASECAP VDGVNEEVEG MVHGHCMCRH
360 370 380 390 400
NTKGLNCELC MDFYHDLPWR PAEGRNSNAC KKCNCNEHSS SCHFDMAVFL
410 420 430 440 450
ATGNVSGGVC DNCQHNTMGR NCEQCKPFYF QHPERDIRDP NLCEPCTCDP
460 470 480 490 500
AGSENGGICD GYTDFSVGLI AGQCRCKLHV EGERCDVCKE GFYDLSAEDP
510 520 530 540 550
YGCKSCACNP LGTIPGGNPC DSETGYCYCK RLVTGQRCDQ CLPQHWGLSN
560 570 580 590 600
DLDGCRPCDC DLGGALNNSC SEDSGQCSCL PHMIGRQCNE VESGYYFTTL
610 620 630 640 650
DHYIYEAEEA NLGPGVIVVE RQYIQDRIPS WTGPGFVRVP EGAYLEFFID
660 670 680 690 700
NIPYSMEYEI LIRYEPQLPD HWEKAVITVQ RPGKIPASSR CGNTVPDDDN
710 720 730 740 750
QVVSLSPGSR YVVLPRPVCF EKGMNYTVRL ELPQYTASGS DVESPYTFID
760 770 780 790 800
SLVLMPYCKS LDIFTVGGSG DGEVTNSAWE TFQRYRCLEN SRSVVKTPMT
810 820 830 840 850
DVCRNIIFSI SALIHQTGLA CECDPQGSLS SVCDPNGGQC QCRPNVVGRT
860 870 880 890 900
CNRCAPGTFG FGPNGCKPCD CHLQGSASAF CDAITGQCHC FQGIYARQCD
910 920 930 940 950
RCLPGYWGFP SCQPCQCNGH ALDCDTVTGE CLSCQDYTTG HNCERCLAGY
960 970 980 990 1000
YGDPIIGSGD HCRPCPCPDG PDSGRQFARS CYQDPVTLQL ACVCDPGYIG
1010 1020 1030 1040 1050
SRCDDCASGF FGNPSDFGGS CQPCQCHHNI DTTDPEACDK ETGRCLKCLY
1060 1070 1080 1090 1100
HTEGDHCQLC QYGYYGDALR QDCRKCVCNY LGTVKEHCNG SDCHCDKATG
1110 1120 1130 1140 1150
QCSCLPNVIG QNCDRCAPNT WQLASGTGCG PCNCNAAHSF GPSCNEFTGQ
1160 1170 1180 1190 1200
CQCMPGFGGR TCSECQELFW GDPDVECRAC DCDPRGIETP QCDQSTGQCV
1210 1220 1230 1240 1250
CVEGVEGPRC DKCTRGYSGV FPDCTPCHQC FALWDAIIGE LTNRTHKFLE
1260 1270 1280 1290 1300
KAKALKISGV IGPYRETVDS VEKKVNEIKD ILAQSPAAEP LKNIGILFEE
1310 1320 1330 1340 1350
AEKLTKDVTE KMAQVEVKLT DTASQSNSTA GELGALQAEA ESLDKTVKEL
1360 1370 1380 1390 1400
AEQLEFIKNS DIQGALDSIT KYFQMSLEAE KRVNASTTDP NSTVEQSALT
1410 1420 1430 1440 1450
RDRVEDLMLE RESPFKEQQE EQARLLDELA GKLQSLDLSA VAQMTCGTPP
1460 1470 1480 1490 1500
GADCSESECG GPNCRTDEGE KKCGGPGCGG LVTVAHSAWQ KAMDFDRDVL
1510 1520 1530 1540 1550
SALAEVEQLS KMVSEAKVRA DEAKQNAQDV LLKTNATKEK VDKSNEDLRN
1560 1570 1580 1590 1600
LIKQIRNFLT EDSADLDSIE AVANEVLKME MPSTPQQLQN LTEDIRERVE
1610 1620 1630 1640 1650
TLSQVEVILQ QSAADIARAE LLLEEAKRAS KSATDVKVTA DMVKEALEEA
1660 1670 1680 1690 1700
EKAQVAAEKA IKQADEDIQG TQNLLTSIES ETAASEETLT NASQRISKLE
1710 1720 1730 1740 1750
RNVEELKRKA AQNSGEAEYI EKVVYSVKQN ADDVKKTLDG ELDEKYKKVE
1760 1770 1780 1790 1800
SLIAQKTEES ADARRKAELL QNEAKTLLAQ ANSKLQLLED LERKYEDNQK
1810 1820 1830
YLEDKAQELV RLEGEVRSLL KDISEKVAVY STCL
Length:1,834
Mass (Da):202,446
Last modified:October 11, 2005 - v1
Checksum:i759EBF58F07E77AF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK147313 mRNA. Translation: BAE27840.1.
RefSeqiNP_032508.2. NM_008482.2.
UniGeneiMm.172674.

Genome annotation databases

GeneIDi16777.
KEGGimmu:16777.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK147313 mRNA. Translation: BAE27840.1.
RefSeqiNP_032508.2. NM_008482.2.
UniGeneiMm.172674.

3D structure databases

ProteinModelPortaliQ3UHL7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000002979.

Proteomic databases

PaxDbiQ3UHL7.
PeptideAtlasiQ3UHL7.
PRIDEiQ3UHL7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi16777.
KEGGimmu:16777.

Organism-specific databases

CTDi3912.
MGIiMGI:96743. Lamb1.

Phylogenomic databases

eggNOGiKOG0994. Eukaryota.
ENOG410XPEG. LUCA.
HOVERGENiHBG052301.
KOiK05636.

Miscellaneous databases

ChiTaRSiLamb1. mouse.
SOURCEiSearch...

Gene expression databases

GenevisibleiQ3UHL7. MM.

Family and domain databases

InterProiIPR000742. EGF-like_dom.
IPR002049. Laminin_EGF.
IPR013015. Laminin_IV_B.
IPR008211. Laminin_N.
[Graphical view]
PfamiPF00053. Laminin_EGF. 13 hits.
PF00055. Laminin_N. 1 hit.
[Graphical view]
SMARTiSM00181. EGF. 10 hits.
SM00180. EGF_Lam. 13 hits.
SM00136. LamNT. 1 hit.
[Graphical view]
PROSITEiPS01248. EGF_LAM_1. 11 hits.
PS50027. EGF_LAM_2. 13 hits.
PS51116. LAMININ_IVB. 1 hit.
PS51117. LAMININ_NTER. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3UHL7_MOUSE
AccessioniPrimary (citable) accession number: Q3UHL7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: July 6, 2016
This is version 90 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.