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Protein

Trinucleotide repeat-containing gene 6A protein

Gene

Tnrc6a

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Plays a role in RNA-mediated gene silencing by both micro-RNAs (miRNAs) and short interfering RNAs (siRNAs). Required for miRNA-dependent repression of translation and for siRNA-dependent endonucleolytic cleavage of complementary mRNAs by argonaute family proteins As scaffoldng protein associates with argonaute proteins bound to partially complementary mRNAs and simultaneously can recruit CCR4-NOT and PAN deadenylase complexes (By similarity).By similarity

GO - Molecular functioni

  • nucleotide binding Source: InterPro
  • poly(A) RNA binding Source: MGI
  • protein complex scaffold Source: MGI

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

RNA-mediated gene silencing, Translation regulation

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Trinucleotide repeat-containing gene 6A protein
Gene namesi
Name:Tnrc6a
Synonyms:Kiaa1460
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Unplaced

Organism-specific databases

MGIiMGI:2385292. Tnrc6a.

Subcellular locationi

  • CytoplasmP-body By similarity

  • Note: Mammalian P-bodies are also known as GW bodies (GWBs).By similarity

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 18961896Trinucleotide repeat-containing gene 6A proteinPRO_0000373980Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1406 – 14061PhosphothreonineBy similarity
Modified residuei1520 – 15201PhosphoserineBy similarity
Modified residuei1804 – 18041PhosphoserineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ3UHK8.
MaxQBiQ3UHK8.
PaxDbiQ3UHK8.
PRIDEiQ3UHK8.

PTM databases

iPTMnetiQ3UHK8.
PhosphoSiteiQ3UHK8.

Interactioni

Subunit structurei

Interacts with AGO2. Interacts with AGO1, AGO3 and AGO4. Interacts with CNOT1; the interaction is direct and mediates the association with the CCR4-NOT complex. Interacts with ZC3H12A.By similarity

GO - Molecular functioni

  • protein complex scaffold Source: MGI

Protein-protein interaction databases

BioGridi231455. 1 interaction.
DIPiDIP-60538N.
IntActiQ3UHK8. 2 interactions.
STRINGi10090.ENSMUSP00000091595.

Structurei

3D structure databases

ProteinModelPortaliQ3UHK8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1716 – 178873RRMAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 917917Interaction with argonaute family proteinsBy similarityAdd
BLAST
Regioni239 – 488250Sufficient for interaction with AGO1, AGO3 and AGO4By similarityAdd
BLAST
Regioni255 – 33177Sufficient for interaction with AGO2By similarityAdd
BLAST
Regioni303 – 38482Sufficient for interaction with AGO2By similarityAdd
BLAST
Regioni325 – 424100Sufficient for interaction with AGO2By similarityAdd
BLAST
Regioni394 – 48087Sufficient for interaction with AGO2By similarityAdd
BLAST
Regioni487 – 736250Sufficient for interaction with AGO2By similarityAdd
BLAST
Regioni551 – 1279729Sufficient for interaction with AGO1 and AGO4By similarityAdd
BLAST
Regioni1059 – 112971Sufficient for interaction with AGO2By similarityAdd
BLAST
Regioni1605 – 1896292Sufficient for interaction with AGO2By similarityAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi31 – 5424Lys-richAdd
BLAST
Compositional biasi93 – 11321Gln-richAdd
BLAST
Compositional biasi334 – 3374Poly-Ser
Compositional biasi1127 – 11304Poly-Glu
Compositional biasi1332 – 141584Gln-richAdd
BLAST
Compositional biasi1592 – 15976Poly-Ser
Compositional biasi1890 – 18934Poly-Gly

Sequence similaritiesi

Belongs to the GW182 family.Curated

Phylogenomic databases

eggNOGiENOG410IF5S. Eukaryota.
ENOG41110AX. LUCA.
HOGENOMiHOG000049171.
InParanoidiQ3UHK8.
KOiK18412.
PhylomeDBiQ3UHK8.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR019486. Argonaute_hook_dom.
IPR012677. Nucleotide-bd_a/b_plait.
IPR032226. TNRC6_PABC-bd.
[Graphical view]
PfamiPF10427. Ago_hook. 1 hit.
PF16608. TNRC6-PABC_bdg. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3UHK8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRELEAKATK DVERNLSRDL VQEEEQLMEE KKKKKDDKKK KEAAQKKATE
60 70 80 90 100
QKIKVPEQIK PSVSQPQPAN SDNGTSTATS TNNNAKRATA SNQQPPPPQQ
110 120 130 140 150
QQPQQEQQQQ QPQALPRYPR EVPPRFRHQE HKQLLKRGQH FPVIAANLGS
160 170 180 190 200
AVKVLNSQSE SSAVTNQQPQ NNGEVQNSKS QSDINHNTSG SHYENCQRGP
210 220 230 240 250
VSSTSDCSTS CKNAVNDLLE KEAWPSAPGS DPELAPECID ADSASNSESE
260 270 280 290 300
RNITVMASGN TGGEKDGLRN STGLGSQSKF VVGSSSNNVG HGSSTGPWGF
310 320 330 340 350
PHGALISTCQ VSVDAPESKP ESSNNRMNAW GTVSSSSNGG LNPSTLNSAS
360 370 380 390 400
NHGAWPVLEN NGLALKGPVG SGSSGINIQC STIGQMPNNQ NINSKVSGSS
410 420 430 440 450
THGTWGSLQE TCEPEVSGTQ KVSFSGQPQN ITTETTGPNN TTNFMTSSLP
460 470 480 490 500
NSGSVQNNEL PTSNPGAWRV STMNHPQIQA PSVMNGTSLS HLSNGESKTG
510 520 530 540 550
GSYGTTWGAY GSNYSGDKCA GPNGQANGDT VNATLMQPGI NGPMGTNFQV
560 570 580 590 600
NTNKGGGVWE PGTVNSQSSP WGSGNGANSG GSRRGWESPA QNTGTGLSSV
610 620 630 640 650
EWNKLPSNQH SNDSANGNGK KLTNGWKSTE EDDQGSATSQ TNEQNSVWAK
660 670 680 690 700
AGGTVESDGS AESTGRLEEK VTGESQSRDR RKIDQHTLLQ SIVNRTDLDP
710 720 730 740 750
RVLSNSGWGQ TPIKQNTAWD TETSPRGERK TDNGTEAWGS SATQTFNSGA
760 770 780 790 800
CTDKTSPNSN DTSSVSGWGD PKPTLRWGDS KGSNCQGGWE DDSAATGMIK
810 820 830 840 850
SNQWGGCKED KSTWNDSQKS KQGWGDGQKS SQGWSISAGD NWGESSRSNH
860 870 880 890 900
WGEANKKSSS GGSDSDRSIS GWNELGKTSS FTWGNNINPN NSSGWDESSK
910 920 930 940 950
PNSSQGWGDP PKCNQSLGWG DSSKPVSSPD WNKQQDIVGS WGIPPATSKP
960 970 980 990 1000
PGTGWLGGPI PAPAKEEEPT GWEEPSPESI RRKMEIDDGT SAWGDPSKYN
1010 1020 1030 1040 1050
YKNVNMWNKN IPEASGRSDQ QAQMHRLLPA ASAVSSKETS SGSGWGEPWA
1060 1070 1080 1090 1100
EPSTPATTVD NGTSAWGKPI DSGPSWGEPI TAASNASTWG SSSVGPQSLS
1110 1120 1130 1140 1150
KSGPKSMQDG WCGDDMPLPG SRPTGWEEEE DVEIGMWNSN SSQELNSSLN
1160 1170 1180 1190 1200
WPPYTKKMSS KGLSGKKRRR ERGMMKGGNK QEDAWINPFV KQFSNISFSR
1210 1220 1230 1240 1250
DSPEENVQSN KMDLSGGMLQ DKRMEIDKHS LNIGDYNRTV GKGPGSRPQI
1260 1270 1280 1290 1300
SKESSMERNP YFDKNGNPNM FGVGNTAAQP RGMQQPPAQP LSSSQPNLRA
1310 1320 1330 1340 1350
QVPPPLLSPQ VPVSLLKYAP NNGGLNPLFG PQQVAMLNQL SQLNQLSQIS
1360 1370 1380 1390 1400
QLQRLLAQQQ RAQSQRSAPS ANRQQQDQQG RPLSVQQQMM QQSRQLDPSL
1410 1420 1430 1440 1450
LVKQQTPPSQ QPLHQPAMKS FLDNVMPHTT PELQKGPSPV NAFSNFPIGL
1460 1470 1480 1490 1500
NSNLNVNMDM NSIKEPQSRL RKWTTVDSMS VNTSLDQNSS KHGAISSGFR
1510 1520 1530 1540 1550
LEESPFVPYD FMNSSTSPAS PPGSIGDGWP RAKSPNGSSS VNWPPEFRPG
1560 1570 1580 1590 1600
EPWKGYPNID PETDPYVTPG SVINSLSINT VREVDHLRDR NSGSSSSLNT
1610 1620 1630 1640 1650
TLPSTSAWSS IRASNYNVPL SSTAQSTSAR NSDSKLTWSP GSVTNTSLAH
1660 1670 1680 1690 1700
ELWKVPLPPK NITAPSRPPP GLTGQKPPLS TWDNSPLRVG GGWGNSDARY
1710 1720 1730 1740 1750
TPGSSWGESS SGRITNWLVL KNLTPQIDGS TLRTLCMQHG PLITFHLNLP
1760 1770 1780 1790 1800
HGNALVRYSS KEEVVKAQKS LHMCVLGNTT ILAEFASEEE ISRFFAQSQS
1810 1820 1830 1840 1850
LTPSPGWQSL GSSQSRLGSL DCSHSFSSRT DVNHWNGAGL SGANCGDLHG
1860 1870 1880 1890
TSLWGTPHYS TSLWGPPSSD PRGISSPSPI NAFLSVDHLG GGGESM
Length:1,896
Mass (Da):203,222
Last modified:October 11, 2005 - v1
Checksum:iD70578F1D6531608
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK147327 mRNA. Translation: BAE27849.1.
CCDSiCCDS57583.1.
RefSeqiNP_659174.3. NM_144925.3.
UniGeneiMm.102305.

Genome annotation databases

GeneIDi233833.
KEGGimmu:233833.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK147327 mRNA. Translation: BAE27849.1.
CCDSiCCDS57583.1.
RefSeqiNP_659174.3. NM_144925.3.
UniGeneiMm.102305.

3D structure databases

ProteinModelPortaliQ3UHK8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi231455. 1 interaction.
DIPiDIP-60538N.
IntActiQ3UHK8. 2 interactions.
STRINGi10090.ENSMUSP00000091595.

PTM databases

iPTMnetiQ3UHK8.
PhosphoSiteiQ3UHK8.

Proteomic databases

EPDiQ3UHK8.
MaxQBiQ3UHK8.
PaxDbiQ3UHK8.
PRIDEiQ3UHK8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi233833.
KEGGimmu:233833.

Organism-specific databases

CTDi27327.
MGIiMGI:2385292. Tnrc6a.
RougeiSearch...

Phylogenomic databases

eggNOGiENOG410IF5S. Eukaryota.
ENOG41110AX. LUCA.
HOGENOMiHOG000049171.
InParanoidiQ3UHK8.
KOiK18412.
PhylomeDBiQ3UHK8.

Miscellaneous databases

ChiTaRSiTnrc6a. mouse.
PROiQ3UHK8.
SOURCEiSearch...

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR019486. Argonaute_hook_dom.
IPR012677. Nucleotide-bd_a/b_plait.
IPR032226. TNRC6_PABC-bd.
[Graphical view]
PfamiPF10427. Ago_hook. 1 hit.
PF16608. TNRC6-PABC_bdg. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].

Entry informationi

Entry nameiTNR6A_MOUSE
AccessioniPrimary (citable) accession number: Q3UHK8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: October 11, 2005
Last modified: June 8, 2016
This is version 101 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.