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Protein
Submitted name:

Putative uncharacterized protein

Gene

Caprin1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Caprin1Imported
Synonyms:Gpiap1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1858234. Caprin1.

PTM / Processingi

Proteomic databases

PaxDbiQ3UFZ6.
PRIDEiQ3UFZ6.

Expressioni

Gene expression databases

BgeeiQ3UFZ6.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000028607.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili59 – 8628Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IEA8. Eukaryota.
ENOG4110M5Q. LUCA.
HOVERGENiHBG107355.

Family and domain databases

InterProiIPR028816. Caprin.
[Graphical view]
PANTHERiPTHR22922. PTHR22922. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q3UFZ6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSATSHSGS GSKSSGPPPP SGSSGSEAAA GAAAPASQHP ATGTGAVQTE
60 70 80 90 100
AMKQILGVID KKLRNLEKKK GKLDDYQERM NKGERLNQDQ LDAVSKYQEV
110 120 130 140 150
TNNLEFAKEL QRSFMALSQD IQKTIKKTAR REQLMREEAE QKRLKTVLEL
160 170 180 190 200
QYVLDKLGDD DVRTDLKQGL SGVPILSEEE LSLLDEFYKL VDPERDMSLR
210 220 230 240 250
LNEQYEHASI HLWDLLEGKE KPVCGTTYKA LKEIVERVFQ SNYFDSTHNH
260 270 280 290 300
QNGLCEEEEA ASAPTVEDQV AEAEPEPAEE YTEQSEVEST EYVNRQFMAE
310 320 330
TQFSSGEKEQ VDEWTVETVE VVNSLQQQPQ AASPSVP
Length:337
Mass (Da):37,583
Last modified:October 11, 2005 - v1
Checksum:i31474CACF81A09A0
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei337 – 3371Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK148203 mRNA. Translation: BAE28413.1.
UniGeneiMm.427589.
Mm.488635.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK148203 mRNA. Translation: BAE28413.1.
UniGeneiMm.427589.
Mm.488635.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000028607.

Proteomic databases

PaxDbiQ3UFZ6.
PRIDEiQ3UFZ6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:1858234. Caprin1.

Phylogenomic databases

eggNOGiENOG410IEA8. Eukaryota.
ENOG4110M5Q. LUCA.
HOVERGENiHBG107355.

Miscellaneous databases

ChiTaRSiCaprin1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ3UFZ6.

Family and domain databases

InterProiIPR028816. Caprin.
[Graphical view]
PANTHERiPTHR22922. PTHR22922. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3UFZ6_MOUSE
AccessioniPrimary (citable) accession number: Q3UFZ6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 17, 2016
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.