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Q3U687 (Q3U687_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length466 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q3U687 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 5E260419AA33DC10

FASTA46654,065
        10         20         30         40         50         60 
MEQLLSPSNM SEESHKSHIH DSLDELRCHF TWELDIKDKH IHDLEIKISE TEFRDPIYSI 

        70         80         90        100        110        120 
GMHNLLAYVR HLKGQQDEAL QSLKEAEALI QSEQLSKRSL ATWGNCAWLH YHRGSLAEAQ 

       130        140        150        160        170        180 
VYLDKVEKVC KEFSSPFRYR LECAEMDCEE GWALRKCGSQ NYTRAMACFE RALKVEPENP 

       190        200        210        220        230        240 
EYNAGYADVA YHLDYYDGNS LQPLKKAVSV KPEDPYLKVL LALKLQDLRK TDEAEKHIKE 

       250        260        270        280        290        300 
ATLTISSQNN IFGYVAKFYR RKGCVEEALG FLKKALETKP SSPYLHFQIG LCHKTQFFQM 

       310        320        330        340        350        360 
KKATSRENRK RADQSCHLAI CHFKKTLELK PTYDRAYIDL AEVYAKNHQQ KEAEDNFQEV 

       370        380        390        400        410        420 
LSMSNLGDYM QQEIHFRYGN FQQYYKKSEE AAITHYLKGL KIEVTSHYRD KLLKALEELA 

       430        440        450        460 
EGRKEDHVLE SLSLLGLVCR LRGDTSEAMS CYEKALRLTG AVNPEF 

« Hide

References

« Hide 'large scale' references
[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[6]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Brain EMBL AAI38203.1.
[7]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (MAR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[8]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[9]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE31838.1.
Tissue: Bone marrow EMBL BAE31838.1 and Cecum EMBL BAE23025.1.
[10]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000108082 Ensembl ENSMUSP00000093816.
[11]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000108082 Ensembl ENSMUSP00000093816.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC016791 Genomic DNA. No translation available.
BC138202 mRNA. Translation: AAI38203.1.
AK136525 mRNA. Translation: BAE23025.1.
AK153247 mRNA. Translation: BAE31838.1.
RefSeqNP_444447.1. NM_053217.2.
UniGeneMm.440727.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000093816.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000087357; ENSMUSP00000093816; ENSMUSG00000067297.
ENSMUST00000112463; ENSMUSP00000108082; ENSMUSG00000067297.
GeneID112419.
KEGGmmu:112419.
UCSCuc008hgs.1. mouse.

Organism-specific databases

MGIMGI:2148249. 2010002M12Rik.

Phylogenomic databases

eggNOGNOG285705.
GeneTreeENSGT00390000013876.
HOGENOMHOG000001558.
HOVERGENHBG066330.
InParanoidQ3U687.
OMANIEDHIL.
OrthoDBEOG71K62V.
TreeFamTF342671.

Gene expression databases

GenevestigatorQ3U687.

Family and domain databases

Gene3D1.25.40.10. 2 hits.
InterProIPR024121. Interferon-induced_IFIT1.
IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR019734. TPR_repeat.
[Graphical view]
PANTHERPTHR10271:SF2. PTHR10271:SF2. 1 hit.
PfamPF00515. TPR_1. 1 hit.
PF13181. TPR_8. 1 hit.
[Graphical view]
SMARTSM00028. TPR. 6 hits.
[Graphical view]
PROSITEPS50005. TPR. 4 hits.
PS50293. TPR_REGION. 3 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio367915.
SOURCESearch...

Entry information

Entry nameQ3U687_MOUSE
AccessionPrimary (citable) accession number: Q3U687
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 19, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)