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Q3U466

- Q3U466_MOUSE

UniProt

Q3U466 - Q3U466_MOUSE

Protein
Submitted name:

Protein Cln6

Gene

Cln6

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein homodimerization activity Source: UniProtKB

    GO - Biological processi

    1. cellular macromolecule catabolic process Source: MGI
    2. cholesterol metabolic process Source: UniProtKB
    3. ganglioside metabolic process Source: UniProtKB
    4. glycosaminoglycan metabolic process Source: UniProtKB
    5. locomotion involved in locomotory behavior Source: MGI
    6. lysosomal lumen acidification Source: UniProtKB
    7. lysosome organization Source: MGI
    8. positive regulation of proteolysis Source: UniProtKB
    9. visual perception Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Cln6Imported
    Gene namesi
    Name:Cln6Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 9

    Organism-specific databases

    MGIiMGI:2159324. Cln6.

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum Source: UniProtKB
    2. endoplasmic reticulum lumen Source: UniProtKB

    Expressioni

    Gene expression databases

    GenevestigatoriQ3U466.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00400000022240.
    HOGENOMiHOG000013091.
    HOVERGENiHBG039396.
    InParanoidiQ3U466.
    KOiK12359.
    OMAiIYIPEPW.
    OrthoDBiEOG70S764.
    TreeFamiTF333294.

    Family and domain databases

    InterProiIPR029255. CLN6.
    [Graphical view]
    PfamiPF15156. CLN6. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3U466-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEAATRRRQL LGAAGGPGVA FVQARHGSVK AEDKDRTAPF HLDLWFYFTL    50
    QNWVLDFGRP IAMLVFPIQW FPLNKPSVGD YFHMTYNIIT PFLLLKLIER 100
    SPRTLPRSIV YVSIITFIMG ASIHLVGDSV NHRLLFSGYQ HHLSVRENPI 150
    IKNLKPETLI DSFELLYYYD EYLGHCMWYI PFFLILFMYF SGCFTTCKAE 200
    SHMPGPALLL VVPSGLYYWY LVTEGQIFIL FIFTFFAMLA LVLHQKRRRL 250
    FLDSNGLFLL YSFALTLSLV ALWVAWLWND PVLRKKYPGV IYVPEPWAFY 300
    TLHVSSQQ 308
    Length:308
    Mass (Da):35,859
    Last modified:October 11, 2005 - v1
    Checksum:i6F82E16DF1E6A7BE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC164614 Genomic DNA. No translation available.
    AK154414 mRNA. Translation: BAE32568.1.
    RefSeqiNP_001028347.1. NM_001033175.2.
    UniGeneiMm.283636.

    Genome annotation databases

    EnsembliENSMUST00000034776; ENSMUSP00000034776; ENSMUSG00000032245.
    GeneIDi76524.
    KEGGimmu:76524.
    UCSCiuc009qan.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC164614 Genomic DNA. No translation available.
    AK154414 mRNA. Translation: BAE32568.1 .
    RefSeqi NP_001028347.1. NM_001033175.2.
    UniGenei Mm.283636.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    DNASUi 76524.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000034776 ; ENSMUSP00000034776 ; ENSMUSG00000032245 .
    GeneIDi 76524.
    KEGGi mmu:76524.
    UCSCi uc009qan.1. mouse.

    Organism-specific databases

    CTDi 54982.
    MGIi MGI:2159324. Cln6.

    Phylogenomic databases

    GeneTreei ENSGT00400000022240.
    HOGENOMi HOG000013091.
    HOVERGENi HBG039396.
    InParanoidi Q3U466.
    KOi K12359.
    OMAi IYIPEPW.
    OrthoDBi EOG70S764.
    TreeFami TF333294.

    Miscellaneous databases

    ChiTaRSi CLN6. mouse.
    NextBioi 345318.
    PROi Q3U466.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q3U466.

    Family and domain databases

    InterProi IPR029255. CLN6.
    [Graphical view ]
    Pfami PF15156. CLN6. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    6. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    9. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    10. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ3U466_MOUSE
    AccessioniPrimary (citable) accession number: Q3U466
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3