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Q3U466

- Q3U466_MOUSE

UniProt

Q3U466 - Q3U466_MOUSE

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Protein
Submitted name:

Protein Cln6

Gene
Cln6
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. protein homodimerization activity Source: UniProtKB

GO - Biological processi

  1. cellular macromolecule catabolic process Source: MGI
  2. cholesterol metabolic process Source: UniProtKB
  3. ganglioside metabolic process Source: UniProtKB
  4. glycosaminoglycan metabolic process Source: UniProtKB
  5. locomotion involved in locomotory behavior Source: MGI
  6. lysosomal lumen acidification Source: UniProtKB
  7. lysosome organization Source: MGI
  8. positive regulation of proteolysis Source: UniProtKB
  9. visual perception Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Cln6Imported
Gene namesi
Name:Cln6Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 9

Organism-specific databases

MGIiMGI:2159324. Cln6.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum Source: UniProtKB
  2. endoplasmic reticulum lumen Source: UniProtKB
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ3U466.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00400000022240.
HOGENOMiHOG000013091.
HOVERGENiHBG039396.
InParanoidiQ3U466.
KOiK12359.
OMAiIYIPEPW.
OrthoDBiEOG70S764.
TreeFamiTF333294.

Family and domain databases

InterProiIPR029255. CLN6.
[Graphical view]
PfamiPF15156. CLN6. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3U466-1 [UniParc]FASTAAdd to Basket

« Hide

MEAATRRRQL LGAAGGPGVA FVQARHGSVK AEDKDRTAPF HLDLWFYFTL    50
QNWVLDFGRP IAMLVFPIQW FPLNKPSVGD YFHMTYNIIT PFLLLKLIER 100
SPRTLPRSIV YVSIITFIMG ASIHLVGDSV NHRLLFSGYQ HHLSVRENPI 150
IKNLKPETLI DSFELLYYYD EYLGHCMWYI PFFLILFMYF SGCFTTCKAE 200
SHMPGPALLL VVPSGLYYWY LVTEGQIFIL FIFTFFAMLA LVLHQKRRRL 250
FLDSNGLFLL YSFALTLSLV ALWVAWLWND PVLRKKYPGV IYVPEPWAFY 300
TLHVSSQQ 308
Length:308
Mass (Da):35,859
Last modified:October 11, 2005 - v1
Checksum:i6F82E16DF1E6A7BE
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC164614 Genomic DNA. No translation available.
AK154414 mRNA. Translation: BAE32568.1.
RefSeqiNP_001028347.1. NM_001033175.2.
UniGeneiMm.283636.

Genome annotation databases

EnsembliENSMUST00000034776; ENSMUSP00000034776; ENSMUSG00000032245.
GeneIDi76524.
KEGGimmu:76524.
UCSCiuc009qan.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC164614 Genomic DNA. No translation available.
AK154414 mRNA. Translation: BAE32568.1 .
RefSeqi NP_001028347.1. NM_001033175.2.
UniGenei Mm.283636.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

DNASUi 76524.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000034776 ; ENSMUSP00000034776 ; ENSMUSG00000032245 .
GeneIDi 76524.
KEGGi mmu:76524.
UCSCi uc009qan.1. mouse.

Organism-specific databases

CTDi 54982.
MGIi MGI:2159324. Cln6.

Phylogenomic databases

GeneTreei ENSGT00400000022240.
HOGENOMi HOG000013091.
HOVERGENi HBG039396.
InParanoidi Q3U466.
KOi K12359.
OMAi IYIPEPW.
OrthoDBi EOG70S764.
TreeFami TF333294.

Miscellaneous databases

ChiTaRSi CLN6. mouse.
NextBioi 345318.
PROi Q3U466.
SOURCEi Search...

Gene expression databases

Genevestigatori Q3U466.

Family and domain databases

InterProi IPR029255. CLN6.
[Graphical view ]
Pfami PF15156. CLN6. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  9. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  10. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3U466_MOUSE
AccessioniPrimary (citable) accession number: Q3U466
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 11, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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