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Protein
Submitted name:

Putative uncharacterized protein

Gene

Tfe3

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Tfe3Imported
Synonyms:Tcfe3Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98511. Tfe3.

PTM / Processingi

PTM databases

iPTMnetiQ3U1L5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini312 – 36554BHLH (basic helix-loop-helix)InterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili365 – 39935Sequence analysisAdd
BLAST

Sequence similaritiesi

Contains 1 basic helix-loop-helix (bHLH) domain.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

HOVERGENiHBG006768.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
IPR021802. MiT/TFE_C.
IPR031867. MiT/TFE_N.
IPR024100. TFE3.
[Graphical view]
PANTHERiPTHR12565:SF163. PTHR12565:SF163. 2 hits.
PfamiPF11851. DUF3371. 1 hit.
PF00010. HLH. 1 hit.
PF15951. MITF_TFEB_C_3_N. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3U1L5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
VLSFSAPLTS ISLALKLQAF LVHSPALSSP HLFQLNVQWC VLNSLLPESG
60 70 80 90 100
IVADIELENI LDPDSFYELK SQPLSLRSSL PISLQATPTT PATLSASSSA
110 120 130 140 150
GGSRTPAMSS SSSRVLLRQQ LMRAQAQEQE RRERREQAAA APFPSPAPAS
160 170 180 190 200
PAISVIGVSA GGHTLSRPPP AQVPREVLKV QTHLENPTRY HLQQARRQQV
210 220 230 240 250
KQYLSTTLGP KLASQALTPP PGPSSAQPLP APETAHATGP TGSAPNSPMA
260 270 280 290 300
LLTIGSSSEK ELPVSGNLLD VYSSQGVATP AITVSNSCPA ELPNIKREIS
310 320 330 340 350
ETEAKALLKE RQKKDNHNLI ERRRRFNIND RIKELGTLIP KSNDPEMRWN
360 370 380 390 400
KGTILKASVD YIRKLQKEQQ RSKDLESRQR SLEQANRSLQ LRIQELELQA
410 420 430 440 450
QIHGLPVPPN PGLLSLTTSS VSDSLKPEQL DIEEEGRPST TFHVSGGPAQ
460 470 480 490 500
NAPPQQPPAP PSDALLDLHF PSDHLGDLGD PFHLGLEDIL MEEEGMVGGL
510 520 530
SGGALSPLRA ASDPLLSSVS PAVSKASSRR SSFSMEEES
Length:539
Mass (Da):58,025
Last modified:October 11, 2005 - v1
Checksum:i2674FA3ABAB83C04
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK155883 mRNA. Translation: BAE33481.1.
RefSeqiNP_001258420.1. NM_001271491.1.
UniGeneiMm.249142.

Genome annotation databases

GeneIDi209446.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK155883 mRNA. Translation: BAE33481.1.
RefSeqiNP_001258420.1. NM_001271491.1.
UniGeneiMm.249142.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

PTM databases

iPTMnetiQ3U1L5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi209446.

Organism-specific databases

CTDi7030.
MGIiMGI:98511. Tfe3.

Phylogenomic databases

HOVERGENiHBG006768.

Miscellaneous databases

SOURCEiSearch...

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
IPR021802. MiT/TFE_C.
IPR031867. MiT/TFE_N.
IPR024100. TFE3.
[Graphical view]
PANTHERiPTHR12565:SF163. PTHR12565:SF163. 2 hits.
PfamiPF11851. DUF3371. 1 hit.
PF00010. HLH. 1 hit.
PF15951. MITF_TFEB_C_3_N. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3U1L5_MOUSE
AccessioniPrimary (citable) accession number: Q3U1L5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 8, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.