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Q3U1C4

- Q3U1C4_MOUSE

UniProt

Q3U1C4 - Q3U1C4_MOUSE

Protein
Submitted name:

MCG1271

Gene

Secisbp2

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. mRNA 3'-UTR binding Source: Ensembl
    2. protein binding Source: MGI
    3. ribonucleoprotein complex binding Source: MGI
    4. selenocysteine insertion sequence binding Source: MGI

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    MCG1271Imported
    Submitted name:
    Protein Secisbp2Imported
    Submitted name:
    SECIS binding protein 2Imported
    Gene namesi
    Name:Secisbp2Imported
    ORF Names:mCG_1271Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 13

    Organism-specific databases

    MGIiMGI:1922670. Secisbp2.

    Subcellular locationi

    GO - Cellular componenti

    1. mitochondrion Source: MGI
    2. ribonucleoprotein complex Source: MGI

    Expressioni

    Gene expression databases

    GenevestigatoriQ3U1C4.

    Interactioni

    Protein-protein interaction databases

    STRINGi10090.ENSMUSP00000045740.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00490000043356.
    HOVERGENiHBG056137.
    InParanoidiQ3U1C4.
    OMAiPMGYVVR.
    OrthoDBiEOG7RRF7R.
    TreeFamiTF328821.

    Family and domain databases

    Gene3Di3.30.1330.30. 1 hit.
    InterProiIPR029064. L30e-like.
    IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
    [Graphical view]
    PfamiPF01248. Ribosomal_L7Ae. 1 hit.
    [Graphical view]
    SUPFAMiSSF55315. SSF55315. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q3U1C4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASERPREPD GEDSIKLSAD VKPFVPKFAG LNVAWSESSE TRVFPGCAAT    50
    YYPFVQEPPA AEQKMYPEDM AFGAPTFPAQ YVSSEIALHP FAYPTYTLES 100
    AQSVCSVPTL QYDYSQARCH PGFRTAKPRH EHVCPPPQEA KGVFKKKPSD 150
    ERRACEEQKS SSRRADNAVP CEARPARGSS HLSSRTESSL KSDGYHKRPD 200
    RKSRILAKSA STSKPEFEFS RLDFPELQSP KNSNMPETQK PPRWGPLGPA 250
    ASNMPLLGDV GKPVADMVEG KMVKSDHTDG AVTSNATTSS PSCTQELSWT 300
    PMGYIVRQTV SSDSAAATEN VTSMINLKKT TSSADAKNVS VTSEALSSNP 350
    SYNREKRVYP APKAKASQGG ELEQNESSKK NKKKKEKSKP SYEVLTVQEP 400
    PRIEDAEEFP NLSVASERRH RGQSPKLHSK QQTQNEFKTS GKKSQVPVQL 450
    DLGGMLAALE KQQQQQHASH AKPSSRPVVF SVGAVPVLSK DASSSERGRR 500
    SSQMKTPHNP LDSSAPLMKK GKQREIPKAK KPTSLKKIIL KERQERMQQR 550
    LQESAVSLTV ASDDSQDVES GASNQTPSQD NPTGPEKTEE SVSSTPVVEG 600
    ESEEPAGTEF QRDPEACQPA PDSATFPKIH SRRFRDYCSQ MLSKEVDACV 650
    TGLLKELVRF QDRMYQKDPV KAKTKRRLVL GLREVLKHLK LRKLKCIIIS 700
    PNCEKTQSKG GLDDTLHTII DCACEQNIPF VFALNRKALG RSLNKAVPVS 750
    IVGIFSYDGA QDQFHKMVEL TMAARQAYKT MLETMRQEQA GEPGPQSPPS 800
    PPMQDPIPST EEGTLPSTGE EPHYIEIWKK HLEAYSQRAL ELEDSLEAST 850
    SQMMNLNL 858
    Length:858
    Mass (Da):94,814
    Last modified:October 11, 2005 - v1
    Checksum:iE34111815971C6C6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC126547 Genomic DNA. No translation available.
    BC125391 mRNA. Translation: AAI25392.1.
    BC125393 mRNA. Translation: AAI25394.1.
    AK156076 mRNA. Translation: BAE33574.1.
    CH466546 Genomic DNA. Translation: EDL41104.1.
    RefSeqiNP_083555.1. NM_029279.1.
    UniGeneiMm.275981.

    Genome annotation databases

    EnsembliENSMUST00000040117; ENSMUSP00000045740; ENSMUSG00000035139.
    GeneIDi75420.
    KEGGimmu:75420.
    UCSCiuc007qmk.2. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC126547 Genomic DNA. No translation available.
    BC125391 mRNA. Translation: AAI25392.1 .
    BC125393 mRNA. Translation: AAI25394.1 .
    AK156076 mRNA. Translation: BAE33574.1 .
    CH466546 Genomic DNA. Translation: EDL41104.1 .
    RefSeqi NP_083555.1. NM_029279.1.
    UniGenei Mm.275981.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 10090.ENSMUSP00000045740.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000040117 ; ENSMUSP00000045740 ; ENSMUSG00000035139 .
    GeneIDi 75420.
    KEGGi mmu:75420.
    UCSCi uc007qmk.2. mouse.

    Organism-specific databases

    CTDi 79048.
    MGIi MGI:1922670. Secisbp2.

    Phylogenomic databases

    GeneTreei ENSGT00490000043356.
    HOVERGENi HBG056137.
    InParanoidi Q3U1C4.
    OMAi PMGYVVR.
    OrthoDBi EOG7RRF7R.
    TreeFami TF328821.

    Miscellaneous databases

    NextBioi 342954.
    PROi Q3U1C4.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q3U1C4.

    Family and domain databases

    Gene3Di 3.30.1330.30. 1 hit.
    InterProi IPR029064. L30e-like.
    IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
    [Graphical view ]
    Pfami PF01248. Ribosomal_L7Ae. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55315. SSF55315. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    6. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
      Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
      , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
      Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: BrainImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    9. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    10. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    11. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    12. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    13. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ3U1C4_MOUSE
    AccessioniPrimary (citable) accession number: Q3U1C4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3