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Q3U1C4

- Q3U1C4_MOUSE

UniProt

Q3U1C4 - Q3U1C4_MOUSE

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Protein
Submitted name:

MCG1271

Gene

Secisbp2

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. mRNA 3'-UTR binding Source: Ensembl
  2. ribonucleoprotein complex binding Source: MGI
  3. selenocysteine insertion sequence binding Source: MGI

GO - Biological processi

  1. negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Source: MGI
  2. selenocysteine incorporation Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
MCG1271Imported
Submitted name:
Protein Secisbp2Imported
Submitted name:
SECIS binding protein 2Imported
Gene namesi
Name:Secisbp2Imported
ORF Names:mCG_1271Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 13

Organism-specific databases

MGIiMGI:1922670. Secisbp2.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrion Source: MGI
  2. nucleus Source: Ensembl
  3. ribonucleoprotein complex Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ3U1C4.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000045740.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00490000043356.
HOVERGENiHBG056137.
OMAiPMGYVVR.
OrthoDBiEOG7RRF7R.
TreeFamiTF328821.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view]
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3U1C4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASERPREPD GEDSIKLSAD VKPFVPKFAG LNVAWSESSE TRVFPGCAAT
60 70 80 90 100
YYPFVQEPPA AEQKMYPEDM AFGAPTFPAQ YVSSEIALHP FAYPTYTLES
110 120 130 140 150
AQSVCSVPTL QYDYSQARCH PGFRTAKPRH EHVCPPPQEA KGVFKKKPSD
160 170 180 190 200
ERRACEEQKS SSRRADNAVP CEARPARGSS HLSSRTESSL KSDGYHKRPD
210 220 230 240 250
RKSRILAKSA STSKPEFEFS RLDFPELQSP KNSNMPETQK PPRWGPLGPA
260 270 280 290 300
ASNMPLLGDV GKPVADMVEG KMVKSDHTDG AVTSNATTSS PSCTQELSWT
310 320 330 340 350
PMGYIVRQTV SSDSAAATEN VTSMINLKKT TSSADAKNVS VTSEALSSNP
360 370 380 390 400
SYNREKRVYP APKAKASQGG ELEQNESSKK NKKKKEKSKP SYEVLTVQEP
410 420 430 440 450
PRIEDAEEFP NLSVASERRH RGQSPKLHSK QQTQNEFKTS GKKSQVPVQL
460 470 480 490 500
DLGGMLAALE KQQQQQHASH AKPSSRPVVF SVGAVPVLSK DASSSERGRR
510 520 530 540 550
SSQMKTPHNP LDSSAPLMKK GKQREIPKAK KPTSLKKIIL KERQERMQQR
560 570 580 590 600
LQESAVSLTV ASDDSQDVES GASNQTPSQD NPTGPEKTEE SVSSTPVVEG
610 620 630 640 650
ESEEPAGTEF QRDPEACQPA PDSATFPKIH SRRFRDYCSQ MLSKEVDACV
660 670 680 690 700
TGLLKELVRF QDRMYQKDPV KAKTKRRLVL GLREVLKHLK LRKLKCIIIS
710 720 730 740 750
PNCEKTQSKG GLDDTLHTII DCACEQNIPF VFALNRKALG RSLNKAVPVS
760 770 780 790 800
IVGIFSYDGA QDQFHKMVEL TMAARQAYKT MLETMRQEQA GEPGPQSPPS
810 820 830 840 850
PPMQDPIPST EEGTLPSTGE EPHYIEIWKK HLEAYSQRAL ELEDSLEAST

SQMMNLNL
Length:858
Mass (Da):94,814
Last modified:October 11, 2005 - v1
Checksum:iE34111815971C6C6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC126547 Genomic DNA. No translation available.
BC125391 mRNA. Translation: AAI25392.1.
BC125393 mRNA. Translation: AAI25394.1.
AK156076 mRNA. Translation: BAE33574.1.
CH466546 Genomic DNA. Translation: EDL41104.1.
RefSeqiNP_083555.1. NM_029279.1.
UniGeneiMm.275981.

Genome annotation databases

EnsembliENSMUST00000040117; ENSMUSP00000045740; ENSMUSG00000035139.
GeneIDi75420.
KEGGimmu:75420.
UCSCiuc007qmk.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC126547 Genomic DNA. No translation available.
BC125391 mRNA. Translation: AAI25392.1 .
BC125393 mRNA. Translation: AAI25394.1 .
AK156076 mRNA. Translation: BAE33574.1 .
CH466546 Genomic DNA. Translation: EDL41104.1 .
RefSeqi NP_083555.1. NM_029279.1.
UniGenei Mm.275981.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000045740.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000040117 ; ENSMUSP00000045740 ; ENSMUSG00000035139 .
GeneIDi 75420.
KEGGi mmu:75420.
UCSCi uc007qmk.2. mouse.

Organism-specific databases

CTDi 79048.
MGIi MGI:1922670. Secisbp2.

Phylogenomic databases

GeneTreei ENSGT00490000043356.
HOVERGENi HBG056137.
OMAi PMGYVVR.
OrthoDBi EOG7RRF7R.
TreeFami TF328821.

Miscellaneous databases

NextBioi 342954.
PROi Q3U1C4.
SOURCEi Search...

Gene expression databases

Genevestigatori Q3U1C4.

Family and domain databases

Gene3Di 3.30.1330.30. 1 hit.
InterProi IPR029064. L30e-like.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view ]
Pfami PF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view ]
SUPFAMi SSF55315. SSF55315. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  6. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  9. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  10. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  11. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  12. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  13. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3U1C4_MOUSE
AccessioniPrimary (citable) accession number: Q3U1C4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 26, 2014
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3