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Q3U1C4

- Q3U1C4_MOUSE

UniProt

Q3U1C4 - Q3U1C4_MOUSE

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Protein
Submitted name: MCG1271
Gene
Secisbp2, mCG_1271
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. mRNA 3'-UTR binding Source: Ensembl
  2. protein binding Source: MGI
  3. ribonucleoprotein complex binding Source: MGI
  4. selenocysteine insertion sequence binding Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
MCG1271Imported
Submitted name:
Protein Secisbp2Imported
Submitted name:
SECIS binding protein 2Imported
Gene namesi
Name:Secisbp2Imported
ORF Names:mCG_1271Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 13

Organism-specific databases

MGIiMGI:1922670. Secisbp2.

Subcellular locationi

GO - Cellular componenti

  1. mitochondrion Source: MGI
  2. ribonucleoprotein complex Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ3U1C4.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000045740.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00490000043356.
HOVERGENiHBG056137.
InParanoidiQ3U1C4.
OMAiPMGYVVR.
OrthoDBiEOG7RRF7R.
TreeFamiTF328821.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
InterProiIPR029064. L30e-like.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view]
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3U1C4-1 [UniParc]FASTAAdd to Basket

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MASERPREPD GEDSIKLSAD VKPFVPKFAG LNVAWSESSE TRVFPGCAAT    50
YYPFVQEPPA AEQKMYPEDM AFGAPTFPAQ YVSSEIALHP FAYPTYTLES 100
AQSVCSVPTL QYDYSQARCH PGFRTAKPRH EHVCPPPQEA KGVFKKKPSD 150
ERRACEEQKS SSRRADNAVP CEARPARGSS HLSSRTESSL KSDGYHKRPD 200
RKSRILAKSA STSKPEFEFS RLDFPELQSP KNSNMPETQK PPRWGPLGPA 250
ASNMPLLGDV GKPVADMVEG KMVKSDHTDG AVTSNATTSS PSCTQELSWT 300
PMGYIVRQTV SSDSAAATEN VTSMINLKKT TSSADAKNVS VTSEALSSNP 350
SYNREKRVYP APKAKASQGG ELEQNESSKK NKKKKEKSKP SYEVLTVQEP 400
PRIEDAEEFP NLSVASERRH RGQSPKLHSK QQTQNEFKTS GKKSQVPVQL 450
DLGGMLAALE KQQQQQHASH AKPSSRPVVF SVGAVPVLSK DASSSERGRR 500
SSQMKTPHNP LDSSAPLMKK GKQREIPKAK KPTSLKKIIL KERQERMQQR 550
LQESAVSLTV ASDDSQDVES GASNQTPSQD NPTGPEKTEE SVSSTPVVEG 600
ESEEPAGTEF QRDPEACQPA PDSATFPKIH SRRFRDYCSQ MLSKEVDACV 650
TGLLKELVRF QDRMYQKDPV KAKTKRRLVL GLREVLKHLK LRKLKCIIIS 700
PNCEKTQSKG GLDDTLHTII DCACEQNIPF VFALNRKALG RSLNKAVPVS 750
IVGIFSYDGA QDQFHKMVEL TMAARQAYKT MLETMRQEQA GEPGPQSPPS 800
PPMQDPIPST EEGTLPSTGE EPHYIEIWKK HLEAYSQRAL ELEDSLEAST 850
SQMMNLNL 858
Length:858
Mass (Da):94,814
Last modified:October 11, 2005 - v1
Checksum:iE34111815971C6C6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC126547 Genomic DNA. No translation available.
BC125391 mRNA. Translation: AAI25392.1.
BC125393 mRNA. Translation: AAI25394.1.
AK156076 mRNA. Translation: BAE33574.1.
CH466546 Genomic DNA. Translation: EDL41104.1.
RefSeqiNP_083555.1. NM_029279.1.
UniGeneiMm.275981.

Genome annotation databases

EnsembliENSMUST00000040117; ENSMUSP00000045740; ENSMUSG00000035139.
GeneIDi75420.
KEGGimmu:75420.
UCSCiuc007qmk.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AC126547 Genomic DNA. No translation available.
BC125391 mRNA. Translation: AAI25392.1 .
BC125393 mRNA. Translation: AAI25394.1 .
AK156076 mRNA. Translation: BAE33574.1 .
CH466546 Genomic DNA. Translation: EDL41104.1 .
RefSeqi NP_083555.1. NM_029279.1.
UniGenei Mm.275981.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000045740.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000040117 ; ENSMUSP00000045740 ; ENSMUSG00000035139 .
GeneIDi 75420.
KEGGi mmu:75420.
UCSCi uc007qmk.2. mouse.

Organism-specific databases

CTDi 79048.
MGIi MGI:1922670. Secisbp2.

Phylogenomic databases

GeneTreei ENSGT00490000043356.
HOVERGENi HBG056137.
InParanoidi Q3U1C4.
OMAi PMGYVVR.
OrthoDBi EOG7RRF7R.
TreeFami TF328821.

Miscellaneous databases

NextBioi 342954.
PROi Q3U1C4.
SOURCEi Search...

Gene expression databases

Genevestigatori Q3U1C4.

Family and domain databases

Gene3Di 3.30.1330.30. 1 hit.
InterProi IPR029064. L30e-like.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view ]
Pfami PF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view ]
SUPFAMi SSF55315. SSF55315. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  6. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  9. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  10. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  11. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  12. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  13. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3U1C4_MOUSE
AccessioniPrimary (citable) accession number: Q3U1C4
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 11, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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