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Q3U0X6

- Q3U0X6_MOUSE

UniProt

Q3U0X6 - Q3U0X6_MOUSE

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Protein
Submitted name: Protein Zfp217
Gene
Zfp217, mCG_6549
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. transcription regulatory region DNA binding Source: Ensembl

GO - Biological processi

  1. negative regulation of transcription, DNA-templated Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zfp217Imported
Submitted name:
Zinc finger protein 217Imported
Gene namesi
Name:Zfp217Imported
ORF Names:mCG_6549Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 2

Organism-specific databases

MGIiMGI:2685408. Zfp217.

Subcellular locationi

GO - Cellular componenti

  1. histone deacetylase complex Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ3U0X6.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000067334.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG319981.
GeneTreeiENSGT00530000063100.
HOGENOMiHOG000276541.
HOVERGENiHBG061769.
InParanoidiQ3U0X6.
OMAiTGNMPTQ.
OrthoDBiEOG7CNZFG.
TreeFamiTF332241.

Family and domain databases

Gene3Di3.30.160.60. 4 hits.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF00096. zf-C2H2. 1 hit.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 8 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 6 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3U0X6-1 [UniParc]FASTAAdd to Basket

« Hide

MPTQSLLVYM DGPEVLSSSL GSQMEVDDAV PIKGPVAVPF RAAQEKSMAV     50
AEGHMPLDCM FCSQVFSQAE DLSQHVLLQH RPTLCEPAVL RVEAEYLSPL 100
DKALEPTEPA LEKSGEDPEE LSCDVCGQTF PVAFDVESHM KKHKDSFTYG 150
CSMCGRRFKE PWFLKNHMRT HNGKSGTRSK LQQGMESPVT INEVVQPHAP 200
GSISTPYKIC MVCGFLFPNK QSLIEHSKVH AKETVPSASN VAPDDHREEP 250
TSPREELLQF LNLRPRSTAG STVKPMTCIP QLDPFTTYQA WQLATKGKVA 300
VAQEEVKESG QEGSTDNDDS CSEKEELGEI WVGGKAEGSG KSKTSKSSCP 350
GLSQDKEKPR HANSEVPSGD SDPKLSSSKE KPTHCSECSK AFRTYHQLVL 400
HSRVHRKDRR TDALSPTMAV DARQPGTCSP DLSTTLEDSG AGDREGGSED 450
GSEDGLPDGL HLDKNDDGGK AKPLPSSREC SYCGKFFRSN YYLNIHLRTH 500
TGEKPYKCEF CEYAAAQKTS LRYHLERHHK DKQPVDAAAE SKSEGRSQEP 550
QDALLTAADS AQTKNLKRFL DGAKDVKGSP PAKQLKEMPS VFQSVLSPAH 600
SNDTQDFHKH AADSAEKARK SPAPTYLDMQ RKKAGEPQAS SPVCRLEGVG 650
SLAREAGHRE KMDQDADYRH KPGADCQDRP LNLSLGPLHA CPAISLSKCL 700
IPSIACPFCT FKTFYPEVLM MHQRLEHRYN PDPHKNGSSK SVLRNRRTGC 750
PPALLGKDVP PLSGLHKPKA KTAFSPHSKS LHSEKARQGA SGPSKAPQTS 800
GPDNSTLAPS NLKSHRSQPN AGGTSATRQQ QSELFPKGGV PAAMDKVKRP 850
EPKLKSLPAS PSQSPLSSNN SNGSVEYPVK VDGPWAQQGR DYYCHRNSGS 900
AAAEYSEPHP KRLKSSAVSL DTEHAGTNGR RGFELPKYHV VRSITSLLPP 950
ECVRPPPVLP HKARFLSPGE VESPSVLAVQ KPYSASGPLY TCGPVGHAGG 1000
SPALEGKRPV SHQHLSNSML QKRSYENFIG NTHYRPNDKK P 1041
Length:1,041
Mass (Da):113,600
Last modified:October 11, 2005 - v1
Checksum:i610BB8BCC936C50D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL844576 Genomic DNA. No translation available.
BC116329 mRNA. Translation: AAI16330.1.
BC116330 mRNA. Translation: AAI16331.1.
AK156475 mRNA. Translation: BAE33725.1.
CH466551 Genomic DNA. Translation: EDL06576.1.
RefSeqiNP_001028471.1. NM_001033299.3.
NP_001153155.1. NM_001159683.1.
XP_006499490.1. XM_006499427.1.
XP_006499491.1. XM_006499428.1.
XP_006499492.1. XM_006499429.1.
XP_006499493.1. XM_006499430.1.
XP_006499494.1. XM_006499431.1.
XP_006499495.1. XM_006499432.1.
XP_006499496.1. XM_006499433.1.
UniGeneiMm.22858.

Genome annotation databases

EnsembliENSMUST00000063710; ENSMUSP00000067334; ENSMUSG00000052056.
ENSMUST00000109155; ENSMUSP00000104783; ENSMUSG00000052056.
GeneIDi228913.
KEGGimmu:228913.
UCSCiuc008obu.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL844576 Genomic DNA. No translation available.
BC116329 mRNA. Translation: AAI16330.1 .
BC116330 mRNA. Translation: AAI16331.1 .
AK156475 mRNA. Translation: BAE33725.1 .
CH466551 Genomic DNA. Translation: EDL06576.1 .
RefSeqi NP_001028471.1. NM_001033299.3.
NP_001153155.1. NM_001159683.1.
XP_006499490.1. XM_006499427.1.
XP_006499491.1. XM_006499428.1.
XP_006499492.1. XM_006499429.1.
XP_006499493.1. XM_006499430.1.
XP_006499494.1. XM_006499431.1.
XP_006499495.1. XM_006499432.1.
XP_006499496.1. XM_006499433.1.
UniGenei Mm.22858.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000067334.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000063710 ; ENSMUSP00000067334 ; ENSMUSG00000052056 .
ENSMUST00000109155 ; ENSMUSP00000104783 ; ENSMUSG00000052056 .
GeneIDi 228913.
KEGGi mmu:228913.
UCSCi uc008obu.2. mouse.

Organism-specific databases

CTDi 228913.
MGIi MGI:2685408. Zfp217.

Phylogenomic databases

eggNOGi NOG319981.
GeneTreei ENSGT00530000063100.
HOGENOMi HOG000276541.
HOVERGENi HBG061769.
InParanoidi Q3U0X6.
OMAi TGNMPTQ.
OrthoDBi EOG7CNZFG.
TreeFami TF332241.

Miscellaneous databases

NextBioi 379250.
PROi Q3U0X6.
SOURCEi Search...

Gene expression databases

Genevestigatori Q3U0X6.

Family and domain databases

Gene3Di 3.30.160.60. 4 hits.
InterProi IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF00096. zf-C2H2. 1 hit.
[Graphical view ]
SMARTi SM00355. ZnF_C2H2. 8 hits.
[Graphical view ]
PROSITEi PS00028. ZINC_FINGER_C2H2_1. 6 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  6. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescued clonesImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  9. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  10. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  11. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  12. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  13. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3U0X6_MOUSE
AccessioniPrimary (citable) accession number: Q3U0X6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: March 19, 2014
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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