ID FUBP2_MOUSE Reviewed; 748 AA. AC Q3U0V1; E9QKH3; Q2VPQ6; Q6P2L2; DT 21-AUG-2007, integrated into UniProtKB/Swiss-Prot. DT 27-JUL-2011, sequence version 2. DT 27-MAR-2024, entry version 146. DE RecName: Full=Far upstream element-binding protein 2; DE Short=FUSE-binding protein 2; DE AltName: Full=KH type-splicing regulatory protein; DE Short=KSRP; GN Name=Khsrp; Synonyms=Fubp2; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=NOD; TISSUE=Spleen; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=C57BL/6J; RX PubMed=19468303; DOI=10.1371/journal.pbio.1000112; RA Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., RA Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., RA Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S., RA Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., RA Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., RA Eichler E.E., Ponting C.P.; RT "Lineage-specific biology revealed by a finished genome assembly of the RT mouse."; RL PLoS Biol. 7:E1000112-E1000112(2009). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 198-748. RC STRAIN=C57BL/6J; TISSUE=Brain; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-182, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Liver; RX PubMed=17242355; DOI=10.1073/pnas.0609836104; RA Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P.; RT "Large-scale phosphorylation analysis of mouse liver."; RL Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007). RN [5] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Embryonic fibroblast; RX PubMed=17525332; DOI=10.1126/science.1140321; RA Matsuoka S., Ballif B.A., Smogorzewska A., McDonald E.R. III, Hurov K.E., RA Luo J., Bakalarski C.E., Zhao Z., Solimini N., Lerenthal Y., Shiloh Y., RA Gygi S.P., Elledge S.J.; RT "ATM and ATR substrate analysis reveals extensive protein networks RT responsive to DNA damage."; RL Science 316:1160-1166(2007). RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-182, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, Brown adipose tissue, Heart, Kidney, Liver, Lung, RC Pancreas, Spleen, and Testis; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). RN [7] RP ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-88, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Embryonic fibroblast; RX PubMed=23806337; DOI=10.1016/j.molcel.2013.06.001; RA Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., RA Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.; RT "SIRT5-mediated lysine desuccinylation impacts diverse metabolic RT pathways."; RL Mol. Cell 50:919-930(2013). RN [8] RP METHYLATION [LARGE SCALE ANALYSIS] AT ARG-40; ARG-412; ARG-414; ARG-416 AND RP ARG-443, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, and Embryo; RX PubMed=24129315; DOI=10.1074/mcp.o113.027870; RA Guo A., Gu H., Zhou J., Mulhern D., Wang Y., Lee K.A., Yang V., Aguiar M., RA Kornhauser J., Jia X., Ren J., Beausoleil S.A., Silva J.C., Vemulapalli V., RA Bedford M.T., Comb M.J.; RT "Immunoaffinity enrichment and mass spectrometry analysis of protein RT methylation."; RL Mol. Cell. Proteomics 13:372-387(2014). CC -!- FUNCTION: Binds to the dendritic targeting element and may play a role CC in mRNA trafficking. Part of a ternary complex that binds to the CC downstream control sequence (DCS) of the pre-mRNA. Mediates exon CC inclusion in transcripts that are subject to tissue-specific CC alternative splicing. May interact with single-stranded DNA from the CC far-upstream element (FUSE). May activate gene expression. Also CC involved in degradation of inherently unstable mRNAs that contain AU- CC rich elements (AREs) in their 3'-UTR, possibly by recruiting CC degradation machinery to ARE-containing mRNAs (By similarity). CC {ECO:0000250}. CC -!- SUBUNIT: Part of a ternary complex containing FUBP2, PTBP1, PTBP2 and CC HNRPH1. Interacts with PARN. Interacts with PQBP1. CC {ECO:0000250|UniProtKB:Q92945}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Cytoplasm {ECO:0000250}. CC Note=A small proportion is also found in the cytoplasm of neuronal cell CC bodies and dendrites. {ECO:0000250}. CC -!- SIMILARITY: Belongs to the KHSRP family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AK156541; BAE33750.1; -; mRNA. DR EMBL; CT571247; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC064454; AAH64454.1; -; mRNA. DR EMBL; BC108414; AAI08415.1; -; mRNA. DR CCDS; CCDS50157.1; -. DR RefSeq; NP_034743.3; NM_010613.3. DR AlphaFoldDB; Q3U0V1; -. DR SMR; Q3U0V1; -. DR BioGRID; 200927; 29. DR IntAct; Q3U0V1; 9. DR MINT; Q3U0V1; -. DR STRING; 10090.ENSMUSP00000007814; -. DR GlyGen; Q3U0V1; 4 sites, 1 O-linked glycan (4 sites). DR iPTMnet; Q3U0V1; -. DR PhosphoSitePlus; Q3U0V1; -. DR SwissPalm; Q3U0V1; -. DR EPD; Q3U0V1; -. DR jPOST; Q3U0V1; -. DR MaxQB; Q3U0V1; -. DR PaxDb; 10090-ENSMUSP00000007814; -. DR PeptideAtlas; Q3U0V1; -. DR ProteomicsDB; 266885; -. DR Pumba; Q3U0V1; -. DR Antibodypedia; 6316; 367 antibodies from 34 providers. DR DNASU; 16549; -. DR Ensembl; ENSMUST00000007814.10; ENSMUSP00000007814.9; ENSMUSG00000007670.11. DR GeneID; 16549; -. DR KEGG; mmu:16549; -. DR UCSC; uc008ddr.2; mouse. DR AGR; MGI:1336214; -. DR CTD; 8570; -. DR MGI; MGI:1336214; Khsrp. DR VEuPathDB; HostDB:ENSMUSG00000007670; -. DR eggNOG; KOG1676; Eukaryota. DR GeneTree; ENSGT00940000156051; -. DR HOGENOM; CLU_014285_1_0_1; -. DR InParanoid; Q3U0V1; -. DR OMA; QPVHQWA; -. DR OrthoDB; 1662at2759; -. DR PhylomeDB; Q3U0V1; -. DR TreeFam; TF313654; -. DR Reactome; R-MMU-450604; KSRP (KHSRP) binds and destabilizes mRNA. DR BioGRID-ORCS; 16549; 5 hits in 80 CRISPR screens. DR ChiTaRS; Khsrp; mouse. DR PRO; PR:Q3U0V1; -. DR Proteomes; UP000000589; Chromosome 17. DR RNAct; Q3U0V1; Protein. DR Bgee; ENSMUSG00000007670; Expressed in ventricular zone and 227 other cell types or tissues. DR ExpressionAtlas; Q3U0V1; baseline and differential. DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central. DR GO; GO:0010494; C:cytoplasmic stress granule; IDA:MGI. DR GO; GO:0005829; C:cytosol; TAS:Reactome. DR GO; GO:0030425; C:dendrite; ISO:MGI. DR GO; GO:0043025; C:neuronal cell body; ISO:MGI. DR GO; GO:0005654; C:nucleoplasm; ISO:MGI. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0035925; F:mRNA 3'-UTR AU-rich region binding; ISS:UniProtKB. DR GO; GO:0003730; F:mRNA 3'-UTR binding; ISO:MGI. DR GO; GO:0003729; F:mRNA binding; IDA:MGI. DR GO; GO:0044183; F:protein folding chaperone; ISO:MGI. DR GO; GO:0061158; P:3'-UTR-mediated mRNA destabilization; ISS:UniProtKB. DR GO; GO:0071345; P:cellular response to cytokine stimulus; ISS:UniProtKB. DR GO; GO:0010586; P:miRNA metabolic process; ISS:UniProtKB. DR GO; GO:0006402; P:mRNA catabolic process; IDA:MGI. DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW. DR GO; GO:0051028; P:mRNA transport; IEA:UniProtKB-KW. DR GO; GO:0010989; P:negative regulation of low-density lipoprotein particle clearance; ISO:MGI. DR GO; GO:0045019; P:negative regulation of nitric oxide biosynthetic process; ISS:UniProtKB. DR GO; GO:0061014; P:positive regulation of mRNA catabolic process; ISS:UniProtKB. DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro. DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central. DR GO; GO:2000628; P:regulation of miRNA metabolic process; IDA:MGI. DR GO; GO:0043488; P:regulation of mRNA stability; ISS:UniProtKB. DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW. DR CDD; cd22479; KH-I_FUBP2_rpt1; 1. DR CDD; cd22482; KH-I_FUBP2_rpt2; 1. DR CDD; cd22485; KH-I_FUBP2_rpt3; 1. DR CDD; cd22488; KH-I_FUBP2_rpt4; 1. DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 4. DR InterPro; IPR015096; FUBP_C. DR InterPro; IPR047372; KH-I_FUBP2_rpt1. DR InterPro; IPR047369; KH-I_FUBP2_rpt2. DR InterPro; IPR047370; KH-I_FUBP2_rpt3. DR InterPro; IPR047371; KH-I_FUBP2_rpt4. DR InterPro; IPR004087; KH_dom. DR InterPro; IPR004088; KH_dom_type_1. DR InterPro; IPR036612; KH_dom_type_1_sf. DR PANTHER; PTHR10288:SF101; FAR UPSTREAM ELEMENT-BINDING PROTEIN 2; 1. DR PANTHER; PTHR10288; KH DOMAIN CONTAINING RNA BINDING PROTEIN; 1. DR Pfam; PF09005; DUF1897; 2. DR Pfam; PF00013; KH_1; 4. DR SMART; SM00322; KH; 4. DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 4. DR PROSITE; PS00178; AA_TRNA_LIGASE_I; 1. DR PROSITE; PS50084; KH_TYPE_1; 4. DR Genevisible; Q3U0V1; MM. PE 1: Evidence at protein level; KW Acetylation; Cytoplasm; DNA-binding; Isopeptide bond; Methylation; KW mRNA processing; mRNA splicing; mRNA transport; Nucleus; Phosphoprotein; KW Reference proteome; Repeat; RNA-binding; Transcription; KW Transcription regulation; Transport; Ubl conjugation. FT INIT_MET 1 FT /note="Removed" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT CHAIN 2..748 FT /note="Far upstream element-binding protein 2" FT /id="PRO_0000298678" FT DOMAIN 145..209 FT /note="KH 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00117" FT DOMAIN 234..300 FT /note="KH 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00117" FT DOMAIN 323..387 FT /note="KH 3" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00117" FT DOMAIN 425..492 FT /note="KH 4" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00117" FT REPEAT 572..583 FT /note="1" FT REPEAT 618..629 FT /note="2" FT REPEAT 644..655 FT /note="3" FT REPEAT 674..685 FT /note="4" FT REGION 1..78 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 90..148 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 394..422 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 498..570 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 572..685 FT /note="4 X 12 AA imperfect repeats" FT REGION 588..650 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 659..678 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 689..735 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 503..546 FT /note="Pro residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 588..615 FT /note="Pro residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 2 FT /note="N-acetylserine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT MOD_RES 40 FT /note="Omega-N-methylarginine" FT /evidence="ECO:0007744|PubMed:24129315" FT MOD_RES 88 FT /note="N6-acetyllysine" FT /evidence="ECO:0007744|PubMed:23806337" FT MOD_RES 101 FT /note="Phosphothreonine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT MOD_RES 126 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT MOD_RES 130 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT MOD_RES 182 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:17242355, FT ECO:0007744|PubMed:21183079" FT MOD_RES 185 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT MOD_RES 194 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT MOD_RES 275 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT MOD_RES 412 FT /note="Omega-N-methylarginine" FT /evidence="ECO:0007744|PubMed:24129315" FT MOD_RES 414 FT /note="Omega-N-methylarginine" FT /evidence="ECO:0007744|PubMed:24129315" FT MOD_RES 416 FT /note="Omega-N-methylarginine" FT /evidence="ECO:0007744|PubMed:24129315" FT MOD_RES 443 FT /note="Omega-N-methylarginine" FT /evidence="ECO:0007744|PubMed:24129315" FT MOD_RES 481 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT CROSSLNK 122 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO1); alternate" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT CROSSLNK 122 FT /note="Glycyl lysine isopeptide (Lys-Gly) (interchain with FT G-Cter in SUMO2); alternate" FT /evidence="ECO:0000250|UniProtKB:Q92945" FT CONFLICT 387 FT /note="I -> F (in Ref. 1; BAE33750)" FT /evidence="ECO:0000305" SQ SEQUENCE 748 AA; 76775 MW; 0699217B3E1E54A9 CRC64; MSDYNTGGPP PGPPPPAGGG GGAAGAGGGP PPGPPGAGDR GGGGPGGGGP GGGGASGGPS QPPGGGGPGI RKDAFADAVQ RARQIAAKIG GDAATTVNNN TPDFGFGGQK RQLEDGDQPD SKKLASQGDS IGSQLGPIHP PPRTSMTEEY RVPDGMVGLI IGRGGEQINK IQQDSGCKVQ ISPDSGGLPE RSVSLTGAPE SVQKAKMMLD DIVSRGRGGP PGQFHDNANG GQNGTVQEIM IPAGKAGLVI GKGGETIKQL QERAGVKMIL IQDGSQNTNV DKPLRIIGDP YKVQQACEMV MDILRERDQG GFGDRNEYGS RVGGGIDVPV PRHSVGVVIG RSGEMIKKIQ NDAGVRIQFK QDDGTGPEKI AHIMGPPDRC EHAARIINDL LQSLRSGPPG PPGAPGMPPG GRGRGRGQGN WGPPGGEMTF SIPTHKCGLV IGRGGENVKA INQQTGAFVE ISRQLPPNGD PNFKLFVIRG SPQQIDHAKQ LIEEKIEGPL CPVGPGPGGP GPAGPMGPFN PGPFNQGPPG APPHAGGPPP HQYPPQGWGN TYPQWQPPAP HDPNKAAAAA TDPNAAWAAY YSHYYQQPPG PVPGPAPAPA APPAQGEPPQ PPPTGQSDYT KAWEEYYKKI GQQPQQPGAP PQQDYTKAWE EYYKKQAQVA TGGGPGAPPG SQPDYSAAWA EYYRQQAAYY GQTPGPGGPQ PPPTQQGQQQ ASGNCHPPPP PFSFQPPATV HPALVGSAGN PFPCGVCP //