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Protein
Submitted name:

Putative uncharacterized protein

Gene

Sptbn1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

Keywords - Ligandi

Actin-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Sptbn1Imported
Synonyms:Spnb2Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98388. Sptbn1.

PTM / Processingi

Proteomic databases

PaxDbiQ3TZN6.
PeptideAtlasiQ3TZN6.

Expressioni

Gene expression databases

BgeeiQ3TZN6.
GenevisibleiQ3TZN6. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000006629.

Structurei

3D structure databases

ProteinModelPortaliQ3TZN6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini41 – 145105Actin-bindingInterPro annotationAdd
BLAST
Domaini160 – 262103Actin-bindingInterPro annotationAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili444 – 47835Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis, RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0035. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG099000.
KOiK06115.

Family and domain databases

Gene3Di1.10.418.10. 2 hits.
InterProiIPR001589. Actinin_actin-bd_CS.
IPR001715. CH-domain.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
[Graphical view]
PfamiPF00307. CH. 2 hits.
PF00435. Spectrin. 3 hits.
[Graphical view]
SMARTiSM00033. CH. 2 hits.
SM00150. SPEC. 3 hits.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS00019. ACTININ_1. 1 hit.
PS00020. ACTININ_2. 1 hit.
PS50021. CH. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3TZN6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MELQRTSSIS GPLSPAYTGQ VPYNYNQLEG RFKQLQDERE AVQKKTFTKW
60 70 80 90 100
VNSHLARVSC RITDLYTDLR DGRMLIKLLE VLSGERLPKP TKGRMRIHCL
110 120 130 140 150
ENVDKALQFL KEQRVHLENM GSHDIVDGNH RLTLGLIWTI ILRFQIQDIS
160 170 180 190 200
VETEDNKEKK SAKDALLLWC QMKTAGYPNV NIHNFTTSWR DGMAFNALIH
210 220 230 240 250
KHRPDLIDFD KLKKSNAHYN LQNAFNLAEQ HLGLTKLLDP EDISVDHPDE
260 270 280 290 300
KSIITYVVTY YHYFSKMKAL AVEGKRIGKV LDNAIETEKM IEKYESLASD
310 320 330 340 350
LLEWIEQTII ILNNRKFANS LVGVQQQLQA FNTYRTVEKP PKFTEKGNLE
360 370 380 390 400
VLLFTIQSKM RANNQKVYMP REGKLISDIN KAWERLEKAE HERELALRNE
410 420 430 440 450
LIRQEKLEQL ARRFDRKAAM RETWLSENQR LVSQDNFGFD LPAVEAATKK
460 470 480 490 500
HEAIETDIAA YEERVQAVVA VARELEAENY HDIKRITARK DNVIRLWEYL
510 520 530 540 550
LELLRARRQR LEMNLGLQKI FQEMLYIMDW MDEMKVLLLS QDYGKHLLGV
560 570 580 590 600
EDLLQKHALV EADIAIQAER VRGVNASAQK FATDGEGYKP CDPQVIRDRV
610 620 630 640
AHMEFCYQEL CQLAAERRAR LEESRRLWKF FWEMAEEEGW IR
Length:642
Mass (Da):75,190
Last modified:October 11, 2005 - v1
Checksum:iC0EE132C28EA6DFC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei642 – 6421Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK157727 mRNA. Translation: BAE34172.1.
RefSeqiNP_033286.2. NM_009260.2.
NP_787030.2. NM_175836.2.
UniGeneiMm.123110.
Mm.466085.

Genome annotation databases

GeneIDi20742.
KEGGimmu:20742.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK157727 mRNA. Translation: BAE34172.1.
RefSeqiNP_033286.2. NM_009260.2.
NP_787030.2. NM_175836.2.
UniGeneiMm.123110.
Mm.466085.

3D structure databases

ProteinModelPortaliQ3TZN6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000006629.

Proteomic databases

PaxDbiQ3TZN6.
PeptideAtlasiQ3TZN6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20742.
KEGGimmu:20742.

Organism-specific databases

CTDi6711.
MGIiMGI:98388. Sptbn1.

Phylogenomic databases

eggNOGiKOG0035. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG099000.
KOiK06115.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiQ3TZN6.
GenevisibleiQ3TZN6. MM.

Family and domain databases

Gene3Di1.10.418.10. 2 hits.
InterProiIPR001589. Actinin_actin-bd_CS.
IPR001715. CH-domain.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
[Graphical view]
PfamiPF00307. CH. 2 hits.
PF00435. Spectrin. 3 hits.
[Graphical view]
SMARTiSM00033. CH. 2 hits.
SM00150. SPEC. 3 hits.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
PROSITEiPS00019. ACTININ_1. 1 hit.
PS00020. ACTININ_2. 1 hit.
PS50021. CH. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: ParthenogenoteImported.

Entry informationi

Entry nameiQ3TZN6_MOUSE
AccessioniPrimary (citable) accession number: Q3TZN6
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: July 6, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.