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Protein
Submitted name:

MCG12570

Gene

Pnrc1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
MCG12570Imported
Submitted name:
Protein Pnrc1Imported
Gene namesi
Name:Pnrc1Imported
ORF Names:mCG_12570Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:1917838. Pnrc1.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000040377.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000063881.
HOVERGENiHBG053626.
KOiK18774.
OMAiPAALPNC.
OrthoDBiEOG7W41CG.
TreeFamiTF333211.

Family and domain databases

InterProiIPR026780. PNRC1/2.
[Graphical view]
PANTHERiPTHR15405. PTHR15405. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3TWH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVVSVPQRD LALSGRLAPL GFLGALPMVN PAPPPLPRLP DPRALPPTLF
60 70 80 90 100
LPHFLGGDGP CLAPAPRTTA PSGCTLAPAA APRAAPKKRR KKKVRASPAG
110 120 130 140 150
QLPSRFHQFQ QHRPSLEGGR SPAPGPIVAQ EERGLAATAL LHRQPPLAKE
160 170 180 190 200
VLKSKMGKSE KIALPHSQLV HGIHLCEQPK INRQKSKYNL PLTKITSAKR
210 220 230 240 250
NESDFWQDSA SSDRMQKQEK KSFKNTENIK SNHLKKSAFL TEVSQKENYA
260 270 280 290
GAKFSDPPSP SVLPKPPSHW MGSTAENPSQ SRELMAVHLK TLLKVQT
Length:297
Mass (Da):32,347
Last modified:October 11, 2005 - v1
Checksum:iD91AD323E9F50A80
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL670464 Genomic DNA. No translation available.
AL772272 Genomic DNA. No translation available.
AK159693 mRNA. Translation: BAE35293.1.
CH466538 Genomic DNA. Translation: EDL05486.1.
RefSeqiNP_001028397.2. NM_001033225.2.
UniGeneiMm.27769.

Genome annotation databases

EnsembliENSMUST00000049357; ENSMUSP00000040377; ENSMUSG00000040128.
GeneIDi108767.
KEGGimmu:108767.
UCSCiuc008sfu.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL670464 Genomic DNA. No translation available.
AL772272 Genomic DNA. No translation available.
AK159693 mRNA. Translation: BAE35293.1.
CH466538 Genomic DNA. Translation: EDL05486.1.
RefSeqiNP_001028397.2. NM_001033225.2.
UniGeneiMm.27769.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000040377.

Protocols and materials databases

DNASUi108767.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000049357; ENSMUSP00000040377; ENSMUSG00000040128.
GeneIDi108767.
KEGGimmu:108767.
UCSCiuc008sfu.1. mouse.

Organism-specific databases

CTDi10957.
MGIiMGI:1917838. Pnrc1.

Phylogenomic databases

GeneTreeiENSGT00530000063881.
HOVERGENiHBG053626.
KOiK18774.
OMAiPAALPNC.
OrthoDBiEOG7W41CG.
TreeFamiTF333211.

Miscellaneous databases

NextBioi361299.
PROiQ3TWH3.
SOURCEiSearch...

Family and domain databases

InterProiIPR026780. PNRC1/2.
[Graphical view]
PANTHERiPTHR15405. PTHR15405. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  6. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
    Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
    , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
    Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  7. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  8. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  9. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  10. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: MixedImported.
  11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  12. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3TWH3_MOUSE
AccessioniPrimary (citable) accession number: Q3TWH3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 24, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.