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Q3TU78

- Q3TU78_MOUSE

UniProt

Q3TU78 - Q3TU78_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Vapb

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. structural molecule activity Source: InterPro

    GO - Biological processi

    1. activation of signaling protein activity involved in unfolded protein response Source: Ensembl
    2. cellular calcium ion homeostasis Source: Ensembl
    3. modulation by virus of host morphology or physiology Source: Ensembl
    4. positive regulation of viral genome replication Source: Ensembl

    Enzyme and pathway databases

    ReactomeiREACT_198151. Sphingolipid de novo biosynthesis.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:VapbImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:1928744. Vapb.

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum membrane Source: Ensembl
    2. Golgi apparatus Source: Ensembl

    Expressioni

    Gene expression databases

    ArrayExpressiQ3TU78.
    BgeeiQ3TU78.
    GenevestigatoriQ3TU78.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3TU78.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG028551.
    InParanoidiQ3TU78.

    Family and domain databases

    Gene3Di2.60.40.360. 1 hit.
    InterProiIPR000535. MSP_dom.
    IPR008962. PapD-like.
    IPR016763. Vesicle-associated_membrane.
    [Graphical view]
    PfamiPF00635. Motile_Sperm. 1 hit.
    [Graphical view]
    PIRSFiPIRSF019693. VAMP-associated. 1 hit.
    SUPFAMiSSF49354. SSF49354. 1 hit.
    PROSITEiPS50202. MSP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q3TU78-1 [UniParc]FASTAAdd to Basket

    « Hide

    QHELKFRGPF TDVVTTNLKL GNPTDRNVCF KVKTTAPRRY CVRPNSGVID    50
    AGASLNVSVM LQPFDYDPNE KSKHKFMVQS MFAPPDTSDM EAVWKEAKPE 100
    DLMDSKLRCV FELPAENAKP HDVEINKIIP TSASKTEAPA AAKSLTSPLD 150
    DTEVKKVMEE CRRLQGEVQR LREESRQLKE EDGLRVRKAM PSNSPVAALA 200
    ATGKEEGLSA RLLALVVLFF IVGVIIGKIA L 231
    Length:231
    Mass (Da):25,593
    Last modified:October 11, 2005 - v1
    Checksum:iD3A3E876DDD00318
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK160925 mRNA. Translation: BAE36093.1.
    UniGeneiMm.260456.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK160925 mRNA. Translation: BAE36093.1 .
    UniGenei Mm.260456.

    3D structure databases

    ProteinModelPortali Q3TU78.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    MGIi MGI:1928744. Vapb.

    Phylogenomic databases

    HOVERGENi HBG028551.
    InParanoidi Q3TU78.

    Enzyme and pathway databases

    Reactomei REACT_198151. Sphingolipid de novo biosynthesis.

    Miscellaneous databases

    ChiTaRSi VAPB. mouse.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q3TU78.
    Bgeei Q3TU78.
    Genevestigatori Q3TU78.

    Family and domain databases

    Gene3Di 2.60.40.360. 1 hit.
    InterProi IPR000535. MSP_dom.
    IPR008962. PapD-like.
    IPR016763. Vesicle-associated_membrane.
    [Graphical view ]
    Pfami PF00635. Motile_Sperm. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF019693. VAMP-associated. 1 hit.
    SUPFAMi SSF49354. SSF49354. 1 hit.
    PROSITEi PS50202. MSP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.
    6. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Placenta and extra embryonic tissueImported.

    Entry informationi

    Entry nameiQ3TU78_MOUSE
    AccessioniPrimary (citable) accession number: Q3TU78
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)