Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative uncharacterized protein

Gene

Sptbn1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Sptbn1Imported
Synonyms:Spnb2Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98388. Sptbn1.

PTM / Processingi

Proteomic databases

PaxDbiQ3TTX2.
PeptideAtlasiQ3TTX2.

Expressioni

Gene expression databases

BgeeiQ3TTX2.
GenevisibleiQ3TTX2. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000006629.

Structurei

3D structure databases

ProteinModelPortaliQ3TTX2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili242 – 26928Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG0035. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG083008.

Family and domain databases

InterProiIPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
[Graphical view]
PfamiPF00435. Spectrin. 5 hits.
[Graphical view]
SMARTiSM00150. SPEC. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3TTX2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
ELYMMSEEKA KDEQSAVSML KKHQILEQAV EDYAETVHQL SKTSRALVAD
60 70 80 90 100
SHPESERISM RQSKVDKLYA GLKDLAEERR GKLDERHRLF QLNREVDDLE
110 120 130 140 150
QWIAEREVVA GSHELGQDYE HVTMLQERFR EFARDTGNIG QERVDTVNNM
160 170 180 190 200
ADELINSGHS DAATIAEWKD GLNEAWADLL ELIDTRTQIL AASYELHKFY
210 220 230 240 250
HDAKEIFGRI QDKHKKLPEE LGRDQNTVET LQRMHTTFEH DIQALGTQVR
260 270 280 290 300
QLQEDAARLQ AAYAGDKADD IQKRENEVLE AWKSLLDACE GRRVRLVDTG
310 320 330 340 350
DKFRFFSMVR DLMLWMEDVI RQIEAQEKPR DVSSVELLMN NHQGIKAEID
360 370 380 390 400
ARNDSFTACI ELGKSLLARK HYASEEIKEK LLQLTEKRKE MIDKWEDRWE
410 420 430 440 450
WLRLILEVHQ FSRDASVAEA WLLGQEPYLS SREIGQSVDE VEKLIKRHEA
460 470 480 490 500
FEKSAATWDE RFSALERLTT LELLEVRRQQ EEEERKRRPP SPDPNTKVSE
510 520 530 540 550
EAESQQWDTS KGDQVSQNGL PAEQGSPRVS YRSQTYQNYK NFNSRRTASD

HSWSGM
Length:556
Mass (Da):64,773
Last modified:October 11, 2005 - v1
Checksum:i3B385872D6B77D7D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK161119 mRNA. Translation: BAE36201.1.
RefSeqiNP_033286.2. NM_009260.2.
UniGeneiMm.123110.
Mm.466085.

Genome annotation databases

GeneIDi20742.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK161119 mRNA. Translation: BAE36201.1.
RefSeqiNP_033286.2. NM_009260.2.
UniGeneiMm.123110.
Mm.466085.

3D structure databases

ProteinModelPortaliQ3TTX2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000006629.

Proteomic databases

PaxDbiQ3TTX2.
PeptideAtlasiQ3TTX2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20742.

Organism-specific databases

CTDi6711.
MGIiMGI:98388. Sptbn1.

Phylogenomic databases

eggNOGiKOG0035. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG083008.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiQ3TTX2.
GenevisibleiQ3TTX2. MM.

Family and domain databases

InterProiIPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
[Graphical view]
PfamiPF00435. Spectrin. 5 hits.
[Graphical view]
SMARTiSM00150. SPEC. 5 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: SkinImported.

Entry informationi

Entry nameiQ3TTX2_MOUSE
AccessioniPrimary (citable) accession number: Q3TTX2
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: July 6, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.