Q3TSR0 (Q3TSR0_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSMUSP00000102110

Gene names

Name:

Extl2 Ensembl ENSMUSP00000102110 MGI 1889574

Organism

Mus musculus (Mouse) EMBL BAE36615.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	316 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular component	intrinsic to endoplasmic reticulum membrane Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3TSR0 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: A87344CDD862AA9D	FASTA	316	35,808
	10 20 30 40 50 60 MGIRVLRFSL VVILVLLLVA GALTNLLPNI KEDKMLTLRR EIKSPSKSAL DSFTLIMQTY 70 80 90 100 110 120 NRTDLLLRLL NHYQAVPSLH KVIVVWNNVG EKGPEELWNS LGPHPIPVIF KPQTANKMRN 130 140 150 160 170 180 RLQVFPEVET NAVLMVDDDT LISAQDLVFA FSIWQQFPDQ IIGFVPRKHV STSSGIYSYG 190 200 210 220 230 240 GFELQTPGPG NGDQYSMVLI GASFFNSKYL ELFQKQPAAV HALIDETQNC DDIAMNFLVT 250 260 270 280 290 300 RHTGKPSGIF VKPINMVNLE KETNGYSGMW HRAEHFLQRS YCINKLVNIY DGMPLKYSNI 310 MISQFGFPYA NHKSKM

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Antisense Transcription in the Mammalian Transcriptome." RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium Science 309:1564-1566(2005) [PubMed: 16141073] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[2]	"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer." Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y. Genome Res. 10:1757-1771(2000) [PubMed: 11076861] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[3]	"Lineage-specific biology revealed by a finished genome assembly of the mouse." Mouse Genome Sequencing Consortium Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P. PLoS Biol. 7:E1000112-E1000112(2009) [PubMed: 19468303] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6 Ensembl ENSMUSP00000102110.
[4]	"Functional annotation of a full-length mouse cDNA collection." The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Nature 409:685-690(2001) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[5]	"High-efficiency full-length cDNA cloning." Carninci P., Hayashizaki Y. Methods Enzymol. 303:19-44(1999) [PubMed: 10349636] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[6]	"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes." Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y. Genome Res. 10:1617-1630(2000) [PubMed: 11042159] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[7]	"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team Nature 420:563-573(2002) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[8]	"The Transcriptional Landscape of the Mammalian Genome." The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) Science 309:1559-1563(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[9]	Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y. Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAE36615.1. Tissue: Medulla oblongata EMBL BAE36615.1.
[10]	Ensembl Submitted (JUN-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: C57BL/6J Ensembl ENSMUSP00000102110.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AC108909 Genomic DNA. No translation available. AK161866 mRNA. Translation: BAE36615.1.
IPI	IPI00831562.
RefSeq	NP_001156987.1. NM_001163515.1.
UniGene	Mm.41739.
3D structure databases
ProteinModelPortal	Q3TSR0.
SMR	Q3TSR0. Positions 49-313.
ModBase	Search...
Protein-protein interaction databases
STRING	Q3TSR0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSMUST00000106501; ENSMUSP00000102110; ENSMUSG00000027963.
GeneID	58193.
KEGG	mmu:58193.
UCSC	uc008rbv.2. mouse.
Organism-specific databases
CTD	2135.
MGI	MGI:1889574. Extl2.
Phylogenomic databases
eggNOG	roNOG06428.
HOVERGEN	HBG051525.
InParanoid	Q3TSR0.
Gene expression databases
ArrayExpress	Q3TSR0.
Bgee	Q3TSR0.
Genevestigator	Q3TSR0.
Family and domain databases
InterPro	IPR015338. HexNAc_Trfase_a. [Graphical view]
KO	K02369.
Pfam	PF09258. Glyco_transf_64. 1 hit. [Graphical view]
ProtoNet	Search...
Other
SOURCE	Search...

Entry information

Entry name

Q3TSR0_MOUSE

Accession

Primary (citable) accession number: Q3TSR0

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	November 16, 2011
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)