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Q3TSE5 (Q3TSE5_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Putative uncharacterized protein EMBL BAE36730.1
Gene names
Name:Birc3 MGI 1197007
OrganismMus musculus (Mouse) EMBL BAE36730.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length545 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Ontologies

Keywords
   DomainZinc-finger RuleBase RU000353
   LigandMetal-binding
Zinc
Gene Ontology (GO)
   Cellular_componentintracellular

Inferred from electronic annotation. Source: InterPro

   Molecular_functionzinc ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAE36730.1

Sequences

Sequence LengthMass (Da)Tools
Q3TSE5 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 615E811814F78B8A

FASTA54560,540
        10         20         30         40         50         60 
GRGAGSRKSR TEEPRKSPAR VATKGEEEVR LVFTLEFPGA LEESTAGISL AVKPTRSHAQ 

        70         80         90        100        110        120 
NYIPRERLVP SPPCHLTMNM VQDSAFLAKL MKSADTFELK YDFSCELYRL STYSAFPRGV 

       130        140        150        160        170        180 
PVSERSLARA GFYYTGANDK VKCFCCGLML DNWKQGDSPM EKHRKLYPSC NFVQTLNPAN 

       190        200        210        220        230        240 
SLEASPRPSL PSTAMSTMPL SFASSENTGY FSGSYSSFPS DPVNFRANQD CPALSTSPYH 

       250        260        270        280        290        300 
FAMNTEKARL LTYETWPLSF LSPAKLAKAG FYYIGPGDRV ACFACDGKLS NWERKDDAMS 

       310        320        330        340        350        360 
EHQRHFPSCP FLKDLGQSAS RYTVSNLSMQ THAARIRTFS NWPSSALVHS QELASAGFYY 

       370        380        390        400        410        420 
TGHSDDVKCF CCDGGLRCWE SGDDPWVEHA KWFPRCEYLL RIKGQEFVSQ VQAGYPHLLE 

       430        440        450        460        470        480 
QLLSTSDSPE DENADAAIVH FGPGESSEDV VMMSTPVVKA ALEMGFSRSL VRQTVQWQIL 

       490        500        510        520        530        540 
ATGENYRTVS DLVIGLLDAE DEMREVSIVF IPCGHLVVCK DCAPSLRKCP ICRGTIKGTV 


RTFLS

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE36730.1.
Tissue: In vitro fertilized eggs EMBL BAE36730.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK162108 mRNA. Translation: BAE36730.1.
IPIIPI00830759.
RefSeqNP_031490.2. NM_007464.3.
UniGeneMm.2026.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID11796.
KEGGmmu:11796.

Organism-specific databases

CTD330.
MGIMGI:1197007. Birc3.

Phylogenomic databases

HOVERGENHBG004848.
KOK16060.

Gene expression databases

GenevestigatorQ3TSE5.

Family and domain databases

Gene3D1.10.1170.10. 4 hits.
3.30.40.10. 1 hit.
InterProIPR001370. BIR.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamPF00653. BIR. 3 hits.
[Graphical view]
SMARTSM00238. BIR. 3 hits.
SM00184. RING. 1 hit.
[Graphical view]
PROSITEPS01282. BIR_REPEAT_1. 3 hits.
PS50143. BIR_REPEAT_2. 3 hits.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio279629.
SOURCESearch...

Entry information

Entry nameQ3TSE5_MOUSE
AccessionPrimary (citable) accession number: Q3TSE5
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 3, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info