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Protein

Secretory carrier-associated membrane protein

Gene

Scamp1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywordsi

Biological processTransportUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Secretory carrier-associated membrane proteinUniRule annotation
Short name:
Secretory carrier membrane proteinUniRule annotation
Gene namesi
Name:Scamp1Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 13

Organism-specific databases

MGIiMGI:1349480. Scamp1.

Subcellular locationi

  • Membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei101 – 122HelicalUniRule annotationAdd BLAST22
Transmembranei134 – 154HelicalUniRule annotationAdd BLAST21
Transmembranei166 – 186HelicalUniRule annotationAdd BLAST21
Transmembranei206 – 230HelicalUniRule annotationAdd BLAST25

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSMUSG00000021687.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000022197.

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili30 – 62Sequence analysisAdd BLAST33

Sequence similaritiesi

Belongs to the SCAMP family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixUniRule annotation

Phylogenomic databases

eggNOGiKOG3088. Eukaryota.
ENOG410XSJN. LUCA.
GeneTreeiENSGT00390000014393.
HOGENOMiHOG000294221.
HOVERGENiHBG071938.

Family and domain databases

InterProiIPR007273. SCAMP.
[Graphical view]
PANTHERiPTHR10687. PTHR10687. 1 hit.
PfamiPF04144. SCAMP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3TSA8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPNVPNTQPA IMKPTEEHPA YTQITKEHAL AQAELLKRQE ELERKAAELD
60 70 80 90 100
RREREMQNLS QHGRKNNWPP LPSNFPVGPC FYQDFSVDIP VEFQKTVKLM
110 120 130 140 150
YYLWMFHAVT LFLNIFGCLA WFCVDSSRAV DFGLSILWFL LFTPCSFVCW
160 170 180 190 200
YRPLYGAFRS DSSFRFFVFF FVYICQFAVH VLQAAGFHNW GNCGWISSLT
210 220 230 240 250
GLNKNIPVGI MMIIIAALFT ASAVISLVMF KKVHGLYRTT GASFEKAQQE
260 270 280
FATGVMSNKT VQTAAANAAS TAATSAAQNA FKGNQM
Length:286
Mass (Da):32,338
Last modified:October 11, 2005 - v1
Checksum:iBB68AFB973B00C73
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC148334 Genomic DNA. No translation available.
AK132867 mRNA. Translation: BAE21397.1.
AK162168 mRNA. Translation: BAE36767.1.
RefSeqiXP_006517578.1. XM_006517515.2.
UniGeneiMm.201455.

Genome annotation databases

EnsembliENSMUST00000152555; ENSMUSP00000123135; ENSMUSG00000021687.
ENSMUST00000153558; ENSMUSP00000120053; ENSMUSG00000021687.
GeneIDi107767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC148334 Genomic DNA. No translation available.
AK132867 mRNA. Translation: BAE21397.1.
AK162168 mRNA. Translation: BAE36767.1.
RefSeqiXP_006517578.1. XM_006517515.2.
UniGeneiMm.201455.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000022197.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000152555; ENSMUSP00000123135; ENSMUSG00000021687.
ENSMUST00000153558; ENSMUSP00000120053; ENSMUSG00000021687.
GeneIDi107767.

Organism-specific databases

CTDi9522.
MGIiMGI:1349480. Scamp1.

Phylogenomic databases

eggNOGiKOG3088. Eukaryota.
ENOG410XSJN. LUCA.
GeneTreeiENSGT00390000014393.
HOGENOMiHOG000294221.
HOVERGENiHBG071938.

Miscellaneous databases

ChiTaRSiScamp1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000021687.

Family and domain databases

InterProiIPR007273. SCAMP.
[Graphical view]
PANTHERiPTHR10687. PTHR10687. 1 hit.
PfamiPF04144. SCAMP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ3TSA8_MOUSE
AccessioniPrimary (citable) accession number: Q3TSA8
Entry historyiIntegrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: January 18, 2017
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.