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Protein
Submitted name:

Putative uncharacterized protein

Gene

Syncrip

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:SyncripImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1891690. Syncrip.

PTM / Processingi

Proteomic databases

PaxDbiQ3TRV3.
PeptideAtlasiQ3TRV3.
PRIDEiQ3TRV3.

Expressioni

Gene expression databases

BgeeiQ3TRV3.
GenevisibleiQ3TRV3. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000133649.

Structurei

3D structure databases

ProteinModelPortaliQ3TRV3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini83 – 15371RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0117. Eukaryota.
ENOG410XTJ5. LUCA.
KOiK13160.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR006535. HnRNP_R/Q_splicing_fac.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
TIGRFAMsiTIGR01648. hnRNP-R-Q. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3TRV3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
KEQILEEFSK VTEGLTDVIL YHQPDDKKKN RGFCFLEYED HKTAAQARRR
60 70 80 90 100
LMSGKVKVWG NVGTVEWADP IEDPDPEVMA KVKVLFVRNL ANTVTEEILE
110 120 130 140 150
KSFSQFGKLE RVKKLKDYAF IHFDERDGAV KAMEEMNGKD LEGENIEIVF
160 170 180 190 200
AKPPDQKRKE RKAQRQAAKN QMYDDYYYYG PPHMPPPTRG RGRGGRGGYG
210 220 230 240 250
YPPDYYGYED YYDYYGYDYH NYRGGYEDPY YGYEDFQVGA RGRGGRGARG
260 270 280 290 300
AAPSRGRGAA PPRGRAGYSQ RGGPGSARGV RGARGGAQQQ RGRGVRGARG
310 320 330 340 350
GRGGNVGGKR KADGYNQPDT KRRQTNNQNW GSQPIAQQPL QGGDHSGNYG
360
YKSENQEFYQ DTFGQQWK
Length:368
Mass (Da):41,633
Last modified:October 11, 2005 - v1
Checksum:iAA56C3D16FE97A17
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK162448 mRNA. Translation: BAE36923.1.
RefSeqiNP_062640.2. NM_019666.2.
UniGeneiMm.260545.

Genome annotation databases

GeneIDi56403.
KEGGimmu:56403.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK162448 mRNA. Translation: BAE36923.1.
RefSeqiNP_062640.2. NM_019666.2.
UniGeneiMm.260545.

3D structure databases

ProteinModelPortaliQ3TRV3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000133649.

Proteomic databases

PaxDbiQ3TRV3.
PeptideAtlasiQ3TRV3.
PRIDEiQ3TRV3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi56403.
KEGGimmu:56403.

Organism-specific databases

CTDi10492.
MGIiMGI:1891690. Syncrip.

Phylogenomic databases

eggNOGiKOG0117. Eukaryota.
ENOG410XTJ5. LUCA.
KOiK13160.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiQ3TRV3.
GenevisibleiQ3TRV3. MM.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR006535. HnRNP_R/Q_splicing_fac.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
TIGRFAMsiTIGR01648. hnRNP-R-Q. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Embryonic body between diaphragm region and neckImported.

Entry informationi

Entry nameiQ3TRV3_MOUSE
AccessioniPrimary (citable) accession number: Q3TRV3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: July 6, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.