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Q3TNZ7

- Q3TNZ7_MOUSE

UniProt

Q3TNZ7 - Q3TNZ7_MOUSE

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Protein
Submitted name:

Putative uncharacterized protein

Gene

Col12a1

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Col12a1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:88448. Col12a1.

Subcellular locationi

GO - Cellular componenti

  1. extracellular matrix Source: Ensembl
  2. extracellular space Source: Ensembl
  3. extracellular vesicular exosome Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiQ3TNZ7.
ExpressionAtlasiQ3TNZ7. baseline and differential.
GenevestigatoriQ3TNZ7.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000080194.

Structurei

3D structure databases

ProteinModelPortaliQ3TNZ7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000111877.

Family and domain databases

Gene3Di2.60.40.10. 3 hits.
3.40.50.410. 1 hit.
InterProiIPR013320. ConA-like_dom.
IPR003961. Fibronectin_type3.
IPR013783. Ig-like_fold.
IPR001791. Laminin_G.
IPR002035. VWF_A.
[Graphical view]
PfamiPF00041. fn3. 3 hits.
PF00092. VWA. 1 hit.
[Graphical view]
SMARTiSM00060. FN3. 3 hits.
SM00210. TSPN. 1 hit.
SM00327. VWA. 1 hit.
[Graphical view]
SUPFAMiSSF49265. SSF49265. 2 hits.
SSF49899. SSF49899. 1 hit.
SSF53300. SSF53300. 1 hit.
PROSITEiPS50853. FN3. 3 hits.
PS50234. VWFA. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3TNZ7 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
TTNSLSVAWD HADGPVQQYR IIYSPTVGDP IDEYTTVPGR RNNVILQPLQ
60 70 80 90 100
PDTPYKITVI AIYEDGDGGH LTGNGRTVGL LPPQNIHIFD EWYTRFRVSW
110 120 130 140 150
DPSPSPVLGY KIVYKPVGSN EPMEAFVGEV TSYTLHNLNP STTYDVSVYA
160 170 180 190 200
QYDSGLSVPL TDQGTTLYLN VTDLKTYQVG WDTFCVKWSP HRAATSYRLK
210 220 230 240 250
LSPADGTRGQ EITVRGSETS HCFTGLSPEA EYGVTVFVQT PNLEGPGVPI
260 270 280 290 300
KEQTTVKPTE APTEPPTPSP PPTIPPARDV CKGAKADIVF LTDASWSIGD
310 320 330 340 350
DNFNKVVKFI FNTVGAFDEV NPAGIQVSFV QYSDEVKSEF KLNTYNDKAL
360 370 380 390 400
ALGALQNIRY RGGNTRTGKA LTFIKEKVLT WESGMRKNVP KVLVVVTDGR
410 420 430 440 450
SQDEVKKAAF VIQQSGFSVF VVGVADVDYN ELANIASKPS ERHVFIVDDF
460 470 480 490 500
ESFEKIEDNL ITFVCETATS SCPLIYLDGY TSPGFKMLEA YNLTEKNFAS
510 520 530 540 550
VQGVSLESGS FPSYSAYRLQ KNAFINQPTA ELHPNGLPPS YTIILLFRLL
560 570 580 590 600
PETPSDPFAI WQITDRDYRP QVGVIADPSS KTLSFFNKDT RGEVQTVTFD
610 620 630
TDEVKTLFYG SFHKVHIVVT SKSVKIYIDC YEI
Length:633
Mass (Da):70,192
Last modified:October 11, 2005 - v1
Checksum:i36A5056DE67B5E0D
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei633 – 6331Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK164846 mRNA. Translation: BAE37940.1.
UniGeneiMm.3819.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK164846 mRNA. Translation: BAE37940.1 .
UniGenei Mm.3819.

3D structure databases

ProteinModelPortali Q3TNZ7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10090.ENSMUSP00000080194.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

MGIi MGI:88448. Col12a1.

Phylogenomic databases

HOGENOMi HOG000111877.

Miscellaneous databases

NextBioi 282278.
SOURCEi Search...

Gene expression databases

Bgeei Q3TNZ7.
ExpressionAtlasi Q3TNZ7. baseline and differential.
Genevestigatori Q3TNZ7.

Family and domain databases

Gene3Di 2.60.40.10. 3 hits.
3.40.50.410. 1 hit.
InterProi IPR013320. ConA-like_dom.
IPR003961. Fibronectin_type3.
IPR013783. Ig-like_fold.
IPR001791. Laminin_G.
IPR002035. VWF_A.
[Graphical view ]
Pfami PF00041. fn3. 3 hits.
PF00092. VWA. 1 hit.
[Graphical view ]
SMARTi SM00060. FN3. 3 hits.
SM00210. TSPN. 1 hit.
SM00327. VWA. 1 hit.
[Graphical view ]
SUPFAMi SSF49265. SSF49265. 2 hits.
SSF49899. SSF49899. 1 hit.
SSF53300. SSF53300. 1 hit.
PROSITEi PS50853. FN3. 3 hits.
PS50234. VWFA. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.

Entry informationi

Entry nameiQ3TNZ7_MOUSE
AccessioniPrimary (citable) accession number: Q3TNZ7
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: October 29, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)