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Q3TNZ7 (Q3TNZ7_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Col12a1 MGI 88448
OrganismMus musculus (Mouse) EMBL BAE37940.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length633 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAE37940.1
Non-terminal residue6331 EMBL BAE37940.1

Sequences

Sequence LengthMass (Da)Tools
Q3TNZ7 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: 36A5056DE67B5E0D

FASTA63370,192
        10         20         30         40         50         60 
TTNSLSVAWD HADGPVQQYR IIYSPTVGDP IDEYTTVPGR RNNVILQPLQ PDTPYKITVI 

        70         80         90        100        110        120 
AIYEDGDGGH LTGNGRTVGL LPPQNIHIFD EWYTRFRVSW DPSPSPVLGY KIVYKPVGSN 

       130        140        150        160        170        180 
EPMEAFVGEV TSYTLHNLNP STTYDVSVYA QYDSGLSVPL TDQGTTLYLN VTDLKTYQVG 

       190        200        210        220        230        240 
WDTFCVKWSP HRAATSYRLK LSPADGTRGQ EITVRGSETS HCFTGLSPEA EYGVTVFVQT 

       250        260        270        280        290        300 
PNLEGPGVPI KEQTTVKPTE APTEPPTPSP PPTIPPARDV CKGAKADIVF LTDASWSIGD 

       310        320        330        340        350        360 
DNFNKVVKFI FNTVGAFDEV NPAGIQVSFV QYSDEVKSEF KLNTYNDKAL ALGALQNIRY 

       370        380        390        400        410        420 
RGGNTRTGKA LTFIKEKVLT WESGMRKNVP KVLVVVTDGR SQDEVKKAAF VIQQSGFSVF 

       430        440        450        460        470        480 
VVGVADVDYN ELANIASKPS ERHVFIVDDF ESFEKIEDNL ITFVCETATS SCPLIYLDGY 

       490        500        510        520        530        540 
TSPGFKMLEA YNLTEKNFAS VQGVSLESGS FPSYSAYRLQ KNAFINQPTA ELHPNGLPPS 

       550        560        570        580        590        600 
YTIILLFRLL PETPSDPFAI WQITDRDYRP QVGVIADPSS KTLSFFNKDT RGEVQTVTFD 

       610        620        630 
TDEVKTLFYG SFHKVHIVVT SKSVKIYIDC YEI 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAE37940.1.
Tissue: Head EMBL BAE37940.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK164846 mRNA. Translation: BAE37940.1.
UniGeneMm.3819.

3D structure databases

ProteinModelPortalQ3TNZ7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000080194.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

KEGGmmu:12816.

Organism-specific databases

CTD1303.
MGIMGI:88448. Col12a1.

Phylogenomic databases

HOGENOMHOG000111877.
InParanoidQ3TNZ7.
KOK08132.

Gene expression databases

ArrayExpressQ3TNZ7.
BgeeQ3TNZ7.
GenevestigatorQ3TNZ7.

Family and domain databases

Gene3D2.60.40.10. 3 hits.
3.40.50.410. 1 hit.
InterProIPR008985. ConA-like_lec_gl_sf.
IPR003961. Fibronectin_type3.
IPR013783. Ig-like_fold.
IPR001791. Laminin_G.
IPR002035. VWF_A.
[Graphical view]
PfamPF00041. fn3. 3 hits.
PF00092. VWA. 1 hit.
[Graphical view]
SMARTSM00060. FN3. 3 hits.
SM00210. TSPN. 1 hit.
SM00327. VWA. 1 hit.
[Graphical view]
SUPFAMSSF49265. SSF49265. 2 hits.
SSF49899. SSF49899. 1 hit.
SSF53300. SSF53300. 1 hit.
PROSITEPS50853. FN3. 3 hits.
PS50234. VWFA. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio282278.
SOURCESearch...

Entry information

Entry nameQ3TNZ7_MOUSE
AccessionPrimary (citable) accession number: Q3TNZ7
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: May 14, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)