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Protein

Protein PRRC2C

Gene

Prrc2c

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • hematopoietic progenitor cell differentiation Source: MGI
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Protein PRRC2C
Alternative name(s):
BAT2 domain-containing protein 1
HLA-B-associated transcript 2-like 2
Proline-rich and coiled-coil-containing protein 2C
Gene namesi
Name:Prrc2c
Synonyms:Bat2d, Bat2d1, Bat2l2, Kiaa1096
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 1

Organism-specific databases

MGIiMGI:1913754. Prrc2c.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003492401 – 2846Protein PRRC2CAdd BLAST2846

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei27N6-acetyllysineBy similarity1
Modified residuei102PhosphoserineCombined sources1
Modified residuei189PhosphoserineBy similarity1
Modified residuei192PhosphoserineCombined sources1
Modified residuei243Asymmetric dimethylarginine; alternateCombined sources1
Modified residuei243Omega-N-methylarginine; alternateCombined sources1
Modified residuei256Asymmetric dimethylarginineBy similarity1
Modified residuei267Asymmetric dimethylarginineBy similarity1
Modified residuei280Omega-N-methylarginineCombined sources1
Modified residuei282Omega-N-methylarginineCombined sources1
Modified residuei336PhosphoserineBy similarity1
Modified residuei393N6-acetyllysineBy similarity1
Modified residuei501PhosphoserineBy similarity1
Modified residuei755PhosphoserineBy similarity1
Modified residuei761PhosphoserineBy similarity1
Modified residuei777PhosphoserineBy similarity1
Modified residuei853PhosphoserineCombined sources1
Modified residuei904PhosphoserineCombined sources1
Cross-linki1106Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residuei1215PhosphoserineBy similarity1
Modified residuei1219PhosphoserineBy similarity1
Modified residuei1221PhosphoserineBy similarity1
Modified residuei1222PhosphoserineBy similarity1
Modified residuei1236PhosphoserineBy similarity1
Modified residuei1238PhosphothreonineCombined sources1
Modified residuei1240PhosphothreonineBy similarity1
Modified residuei1516PhosphoserineBy similarity1
Modified residuei1917PhosphothreonineBy similarity1
Modified residuei1935PhosphoserineCombined sources1
Modified residuei1938PhosphoserineCombined sources1
Modified residuei1965PhosphoserineBy similarity1
Modified residuei2057PhosphoserineBy similarity1
Modified residuei2095PhosphoserineBy similarity1
Modified residuei2212PhosphoserineBy similarity1
Modified residuei2625PhosphothreonineCombined sources1
Modified residuei2634PhosphothreonineBy similarity1
Modified residuei2638PhosphoserineBy similarity1
Modified residuei2646PhosphoserineBy similarity1
Modified residuei2766Omega-N-methylarginineCombined sources1
Modified residuei2775Asymmetric dimethylarginine; alternateCombined sources1
Modified residuei2775Omega-N-methylarginine; alternateCombined sources1

Keywords - PTMi

Acetylation, Isopeptide bond, Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

MaxQBiQ3TLH4.
PaxDbiQ3TLH4.
PeptideAtlasiQ3TLH4.
PRIDEiQ3TLH4.

PTM databases

iPTMnetiQ3TLH4.
PhosphoSitePlusiQ3TLH4.

Expressioni

Gene expression databases

BgeeiENSMUSG00000040225.
ExpressionAtlasiQ3TLH4. baseline and differential.
GenevisibleiQ3TLH4. MM.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi230531. 2 interactors.
IntActiQ3TLH4. 1 interactor.
MINTiMINT-4111556.
STRINGi10090.ENSMUSP00000028016.

Structurei

3D structure databases

ProteinModelPortaliQ3TLH4.
SMRiQ3TLH4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili995 – 1026Sequence analysisAdd BLAST32
Coiled coili1655 – 1681Sequence analysisAdd BLAST27

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi381 – 440Pro-richAdd BLAST60
Compositional biasi468 – 627Glu-richAdd BLAST160
Compositional biasi530 – 679Gln-richAdd BLAST150
Compositional biasi673 – 745Pro-richAdd BLAST73
Compositional biasi1033 – 1062Pro-richAdd BLAST30
Compositional biasi1314 – 1416Arg-richAdd BLAST103
Compositional biasi1716 – 1913Pro-richAdd BLAST198
Compositional biasi1732 – 1739Poly-Ala8
Compositional biasi1790 – 1793Poly-Ser4
Compositional biasi2297 – 2586Gln-richAdd BLAST290

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiKOG4817. Eukaryota.
ENOG4111VEG. LUCA.
GeneTreeiENSGT00530000063496.
HOVERGENiHBG107491.
InParanoidiQ3TLH4.
OMAiTNTFPAP.
OrthoDBiEOG091G02WC.

Family and domain databases

InterProiIPR009738. BAT2_N.
IPR033184. PRRC2.
[Graphical view]
PANTHERiPTHR14038. PTHR14038. 4 hits.
PfamiPF07001. BAT2_N. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q3TLH4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSEKSGQSTK AKDGKKYATL SLFNTYKGKS LETQKTTVAA RHGLQSLGKV
60 70 80 90 100
GISRRMPPPA NLPSLKAENK GNDPNVNIVP KDGTGWASKQ EQHEEEKAPE
110 120 130 140 150
VSPAQPKPGV AAPPEVAPAP KSWASNKQGG QGDGIQVNSQ FQQEFPSLQA
160 170 180 190 200
AGDQEKKEKE ANDENYGPGP SLRPPNVACW RDGGKSAGSP SSDQDEKQLG
210 220 230 240 250
QDESTAITSE QNDILKVVEK RIACGPPQAK LNGQQPALAS QYRAMMPPYM
260 270 280 290 300
FQQYPRMAYP PLHGPMRFPP SLSEANKSLR GRGPPPSWAS EPERPSILSA
310 320 330 340 350
SELKELDKFD NLDAEADEGW AGAQMEVDYT EQLNFSDDDE QGSTSPKESS
360 370 380 390 400
SEDQTAKTPE STENRKEVDE ASSTKSSSQI PAQPPVTKSP YGKGPPFNQE
410 420 430 440 450
RGPSSHLPPP PKLLAQQHPP PPDRQIPGRQ GPFPSKPPVP DNDEIWKQRR
460 470 480 490 500
KQQSEISAAV ERARKRREEE ERRMEEQRKA ACAEKLKQLD EKLGIIEKQP
510 520 530 540 550
SPEELRERER EKERERELEK EKERELEKEQ EKQREMERAR QQEKELEQQR
560 570 580 590 600
EKEQELQRLR EQEKEGEPKE QEKEEKVEPQ EPVVEPATEN QESENNCKKE
610 620 630 640 650
EEPIFTRQDS NRSEKETTQV VQEAEPESGA QPRPGYFKQF QKSLPPRFQR
660 670 680 690 700
QQEQMKQQQW QQQQQQQQQG VLPQTVPSQP SNGSVPPPPH RPLYQPMQPH
710 720 730 740 750
PQHLASMGFD PRWLMMQSYM DPRMISGRPA MDIPPIHPGM IPPKPLIRRD
760 770 780 790 800
QMEGSPNSSE SFEHIARSAR DHGISLSEPR MMWGSDPYHA EPQQAATPKS
810 820 830 840 850
AEETGDARPE TAMDHEHMTA AYPVEHSQLE THSKTDVARD STETEEQKFL
860 870 880 890 900
SRSLEDVKPR HVDTNTQSAC FDVIDQKSLP TSAEERISAL ESQPARKRSV
910 920 930 940 950
SHGSNHAQNA EEQRNEPSVS IPKVINRCMD SKETVEKPEE KPRKDGFLRS
960 970 980 990 1000
SEGPKPEKVY KSKSETRWGP RPSSNRREEG NDRPVRRSGP IKKPVLRDMK
1010 1020 1030 1040 1050
EEREQRKEKE GEKLEKVTEK VVKAEKPEKK DLPLPLPPPA PAQPQPQPLV
1060 1070 1080 1090 1100
SPPVQPEPEK PPSTETSTLT QKPSQDEKPL EPVGSVQVEP VVKTVNQQSV
1110 1120 1130 1140 1150
AAPTVKEEKP PEKVINKDVG IERSRPDSRL AVKKDSSLPT RTYWKEARDR
1160 1170 1180 1190 1200
DWFPDQGYRG RGRGEYYSRG RSYRGSYGGR GRGGRGHTRE YPQYRDNKPR
1210 1220 1230 1240 1250
TEHVPSGPLR QREESETRSE SSDFEVVPKR RRQRGSETDT DSEVHESASD
1260 1270 1280 1290 1300
KDSVSKGKLP KREERPENKK PVKPQSSFKP ENHVRIDNRP LEKPYIREED
1310 1320 1330 1340 1350
KSKPGFLPKG EPTRRGRGGT FRRGGRDPGG RPSRPATLRR PAYRDNQWNT
1360 1370 1380 1390 1400
RQAEPPKPED GEPPRRHEQF MPIPADKRPP KFERKFDPAR ERPRRQRPTR
1410 1420 1430 1440 1450
PPRQDKPPRF RRLREREAAS KTSEVLVPSN GTANNVVQEP VNPPADISGN
1460 1470 1480 1490 1500
KTPDLSNQNS SDQANEEWET ASESSDFNER RERDEKKNAD KSSQAVVKAG
1510 1520 1530 1540 1550
ESVLPPKREI AKRSFSSQRP GVDRQNRRGN NGPPKSGRNF SGPRNERRNG
1560 1570 1580 1590 1600
PPSKGGKRGP FDDQASGTAG ADPVSGNSAH HQEGVPNGAG QKNSKDAAGK
1610 1620 1630 1640 1650
KREDTKPGPK KPKEKVDALS QFDLNNYASV VIIDDHPEVT VIEDPQSNLN
1660 1670 1680 1690 1700
DDGFTEVVSK KQQKRLQDEE RRKKEEQVVQ VWSKKNIGEK GRSQTSKLPP
1710 1720 1730 1740 1750
RFAKKQATGT QQIQAPPSAP VPVSSSAPGL TAPAAAAPAS TPAPVPILAS
1760 1770 1780 1790 1800
ATALVPVSTP APVLTSCPAP VPTSASAPVP ASTSSPVTAS SSSQPSVPAP
1810 1820 1830 1840 1850
TPVLASASTT VSVPILTSAS IPILASALAP ATVSSPTPVV SATAVPSIST
1860 1870 1880 1890 1900
PAVPASAPTA SVPLAPASAA STVPPPASTV QTQTQTQTHK PVQSPLPPSA
1910 1920 1930 1940 1950
PSSKQPPPSI RLPSAQTSNG TDFVAAGKSM PTSQSHGSLT AELWDSKVAA
1960 1970 1980 1990 2000
PAVLNDISKK LGPISPPQPP SVSAWNKPLT SFGSATSSEG TRNGQESGVE
2010 2020 2030 2040 2050
IGIDTIQFGA PASNGNENEV VPVLSEKATD KVPEPKEQRQ KQPRAGPIKA
2060 2070 2080 2090 2100
QKLPDLSLVE NKEHKPGPIG KERSLKNRKV KDAQQVEPEG QEKPSPAVVR
2110 2120 2130 2140 2150
STDPETAKET KAVSEMSAEI GAMISVSSAE YGSDAKESVT DYTTPSSSLP
2160 2170 2180 2190 2200
NTVATNNAKM EDTLVNNVPL PNTLPLPKRE TIQQSSSLTS VPPTTFSLTF
2210 2220 2230 2240 2250
KMESARKAWE NSPNLREKGS PVTSTAPPIV SGVSSSASGP STANYSSFSS
2260 2270 2280 2290 2300
ASMPQIPVAS VTPTASLSGA GTYTTSSLST KSTTTSDPPN ICKVKPQQLQ
2310 2320 2330 2340 2350
TSSLPSASHF SQLSCMPSLI AQQQQSPQVY VSQSAAAQIP AFYMDTSHLF
2360 2370 2380 2390 2400
NTQHARLAPP SLAQQQGFQP GLSQPTSVQQ IPIPIYAPLQ GQHQAQLSLG
2410 2420 2430 2440 2450
AGPAVSQAQE LFSSSIQPYR SQPAFMQSSL SQPSVVLSGT AIHNFPAVQH
2460 2470 2480 2490 2500
QELAKAQSGL AFQQTSNPQP IPILYDHQLG QASGLGSSQL IDTHLLQARA
2510 2520 2530 2540 2550
NLTQASNLYS GQVQQPGQTN FYNTAQSPSA LQQVTVPLPA SQLSLTNFGS
2560 2570 2580 2590 2600
TGQPLIALPQ TLQPQLQHTT PQAQAQSLSR PAQVSQPFRG LIPAGTQHSM
2610 2620 2630 2640 2650
MATTGKMSEM ELKAFGSGID IKPGTPPIGG RSTTPTSSPF RATSTSPNSQ
2660 2670 2680 2690 2700
SSKMNSVVYQ KQFQSAPATV RMAQPFPAQF APQILSQPNL VPPLVRAPHT
2710 2720 2730 2740 2750
NTFPAPVQRP PMALASQMPP PLTTGLMSHA RLPHVARGPC GSLSGVRGNQ
2760 2770 2780 2790 2800
AQAALKAEQD LKAKQRAEVL QSTQRFFSEQ QQNKQIGGKT QRVDSDTSNP
2810 2820 2830 2840
ETLSDPPGTC PEKVEEKPPP APTITTKPVR TGPIKPQAIK TEETKS
Length:2,846
Mass (Da):310,892
Last modified:January 9, 2013 - v3
Checksum:i2AEFFE844FBC60C8
GO
Isoform 5 (identifier: Q3TLH4-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     2684-2762: Missing.

Note: No experimental confirmation available.
Show »
Length:2,767
Mass (Da):302,606
Checksum:iA23A9945F3F383F2
GO

Sequence cautioni

The sequence AAH06723 differs from that shown. Contaminating sequence. Potential poly-A sequence.Curated
The sequence AAH21412 differs from that shown. Contaminating sequence. Potential poly-A sequence.Curated
The sequence AAH37745 differs from that shown. Contaminating sequence. Potential poly-A sequence.Curated
The sequence AAH80672 differs from that shown. Contaminating sequence. Potential poly-A sequence.Curated
The sequence AAH99612 differs from that shown. Contaminating sequence. Potential poly-A sequence.Curated
The sequence BAC25414 differs from that shown. Reason: Frameshift at positions 199, 239, 376 and 379.Curated
The sequence BAC65723 differs from that shown. Reason: Frameshift at position 1877.Curated
The sequence BAE22468 differs from that shown. Probable cloning artifact.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti38 – 39Missing in AAH80672 (PubMed:16141072).Curated2
Sequence conflicti38 – 39Missing in BAC25414 (PubMed:16141072).Curated2
Sequence conflicti38 – 39Missing in BAE38818 (PubMed:16141072).Curated2
Sequence conflicti38 – 39Missing in BAE39192 (PubMed:16141072).Curated2
Sequence conflicti186S → C in BAE38818 (PubMed:16141072).Curated1
Sequence conflicti264G → V in BAC25414 (PubMed:16141072).Curated1
Sequence conflicti347K → E in BAC25414 (PubMed:16141072).Curated1
Sequence conflicti376 – 378SSS → IIF in BAC25414 (PubMed:16141072).Curated3
Sequence conflicti382A → T in BAE38818 (PubMed:16141072).Curated1
Sequence conflicti563E → K in AAH64009 (PubMed:15489334).Curated1
Sequence conflicti846E → G in BAE38818 (PubMed:16141072).Curated1
Sequence conflicti1362E → G in BAC65723 (PubMed:12693553).Curated1
Sequence conflicti1491K → M in BAC65723 (PubMed:12693553).Curated1
Sequence conflicti1686N → K in AAH50871 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0352552684 – 2762Missing in isoform 5. 1 PublicationAdd BLAST79

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC118643 Genomic DNA. No translation available.
AC132867 Genomic DNA. No translation available.
AK013732 mRNA. Translation: BAC25414.1. Frameshift.
AK030766 mRNA. Translation: BAC27127.1.
AK135245 mRNA. Translation: BAE22468.1. Sequence problems.
AK166509 mRNA. Translation: BAE38818.1.
AK167018 mRNA. Translation: BAE39192.1.
BC006723 mRNA. Translation: AAH06723.1. Sequence problems.
BC021412 mRNA. Translation: AAH21412.1. Sequence problems.
BC037745 mRNA. Translation: AAH37745.1. Sequence problems.
BC050871 mRNA. Translation: AAH50871.1.
BC064009 mRNA. Translation: AAH64009.1.
BC080672 mRNA. Translation: AAH80672.1. Sequence problems.
BC099612 mRNA. Translation: AAH99612.1. Sequence problems.
AK122441 Transcribed RNA. Translation: BAC65723.1. Frameshift.
CCDSiCCDS35749.1. [Q3TLH4-1]
RefSeqiNP_001074759.1. NM_001081290.1. [Q3TLH4-1]
XP_011237086.1. XM_011238784.2. [Q3TLH4-5]
UniGeneiMm.245446.

Genome annotation databases

EnsembliENSMUST00000182660; ENSMUSP00000138433; ENSMUSG00000040225. [Q3TLH4-1]
GeneIDi226562.
KEGGimmu:226562.
UCSCiuc007dgr.1. mouse. [Q3TLH4-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC118643 Genomic DNA. No translation available.
AC132867 Genomic DNA. No translation available.
AK013732 mRNA. Translation: BAC25414.1. Frameshift.
AK030766 mRNA. Translation: BAC27127.1.
AK135245 mRNA. Translation: BAE22468.1. Sequence problems.
AK166509 mRNA. Translation: BAE38818.1.
AK167018 mRNA. Translation: BAE39192.1.
BC006723 mRNA. Translation: AAH06723.1. Sequence problems.
BC021412 mRNA. Translation: AAH21412.1. Sequence problems.
BC037745 mRNA. Translation: AAH37745.1. Sequence problems.
BC050871 mRNA. Translation: AAH50871.1.
BC064009 mRNA. Translation: AAH64009.1.
BC080672 mRNA. Translation: AAH80672.1. Sequence problems.
BC099612 mRNA. Translation: AAH99612.1. Sequence problems.
AK122441 Transcribed RNA. Translation: BAC65723.1. Frameshift.
CCDSiCCDS35749.1. [Q3TLH4-1]
RefSeqiNP_001074759.1. NM_001081290.1. [Q3TLH4-1]
XP_011237086.1. XM_011238784.2. [Q3TLH4-5]
UniGeneiMm.245446.

3D structure databases

ProteinModelPortaliQ3TLH4.
SMRiQ3TLH4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi230531. 2 interactors.
IntActiQ3TLH4. 1 interactor.
MINTiMINT-4111556.
STRINGi10090.ENSMUSP00000028016.

PTM databases

iPTMnetiQ3TLH4.
PhosphoSitePlusiQ3TLH4.

Proteomic databases

MaxQBiQ3TLH4.
PaxDbiQ3TLH4.
PeptideAtlasiQ3TLH4.
PRIDEiQ3TLH4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000182660; ENSMUSP00000138433; ENSMUSG00000040225. [Q3TLH4-1]
GeneIDi226562.
KEGGimmu:226562.
UCSCiuc007dgr.1. mouse. [Q3TLH4-1]

Organism-specific databases

CTDi23215.
MGIiMGI:1913754. Prrc2c.
RougeiSearch...

Phylogenomic databases

eggNOGiKOG4817. Eukaryota.
ENOG4111VEG. LUCA.
GeneTreeiENSGT00530000063496.
HOVERGENiHBG107491.
InParanoidiQ3TLH4.
OMAiTNTFPAP.
OrthoDBiEOG091G02WC.

Miscellaneous databases

ChiTaRSiPrrc2c. mouse.
PROiQ3TLH4.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000040225.
ExpressionAtlasiQ3TLH4. baseline and differential.
GenevisibleiQ3TLH4. MM.

Family and domain databases

InterProiIPR009738. BAT2_N.
IPR033184. PRRC2.
[Graphical view]
PANTHERiPTHR14038. PTHR14038. 4 hits.
PfamiPF07001. BAT2_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiPRC2C_MOUSE
AccessioniPrimary (citable) accession number: Q3TLH4
Secondary accession number(s): E9QKG5
, Q05CS4, Q05DM5, Q3TKF3, Q3UXU5, Q4FZE4, Q66K03, Q6P3F4, Q80TK3, Q80YR0, Q8BMJ4, Q8C1K7, Q8CGH3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: January 9, 2013
Last modified: November 2, 2016
This is version 82 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.