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Protein
Submitted name:

Transportin-1

Gene

Tnpo1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Transportin-1Imported
Gene namesi
Name:Tnpo1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 13

Organism-specific databases

MGIiMGI:2681523. Tnpo1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Expressioni

Gene expression databases

ExpressionAtlasiQ3TKD0. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000105028.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini33 – 10169Importin N-terminalInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2023. Eukaryota.
ENOG410XPK2. LUCA.
GeneTreeiENSGT00550000074720.
HOVERGENiHBG058963.

Family and domain databases

Gene3Di1.25.10.10. 2 hits.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR001494. Importin-beta_N.
[Graphical view]
PfamiPF03810. IBN_N. 1 hit.
[Graphical view]
SMARTiSM00913. IBN_N. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
PROSITEiPS50166. IMPORTIN_B_NT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3TKD0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEYEWKPDEQ GLQQILQLLK ESQSPDTTIQ RTVQQKLEQL NQYPDFNNYL
60 70 80 90 100
IFVLTKLKSE DEPTRSLSGL ILKNNVKAHF QNFPNGVTDF IKSECLNNIG
110 120 130 140 150
DSSPLIRATV GILITTIASK GELQNWPDLL PKLCSLLDSE DYNTCEGAFG
160 170 180 190 200
ALQKICEDSA EILDSDVLDR PLNIMIPKFL QFFKHSSPKI RSHAVACVNQ
210 220 230 240 250
FIISRTQALM LHIDSFIENL FALAGDEEAE VRKNVCRALV MLLEVRMDRL
260 270 280 290 300
LPHMHNIVEY MLQRTQDQDE NVALEACEFW LTLAEQPICK DVLVRHLPKL
310 320 330 340 350
IPVLVNGMKY SDIDIILLKG DVEEDETIPD SEQDIRPRFH RSRTVAQQHE
360 370 380 390 400
EDGIEEEDDD DDEIDDDDTI SDWNLRKCSA AALDVLANVY RDELLPHILP
410 420 430 440 450
LLKELLFHHE WVVKESGILV LGAIAEGCMQ GMIPYLPELI PHLIQCLSDK
460 470 480 490 500
KALVRSITCW TLSRYAHWVV SQPPDTYLKP LMTELLKRIL DSNKRVQEAA
510 520 530 540 550
CSAFATLEEE ACTELVPYLA YILDTLVFAF SKYQHKNLLI LYDAIGTLAD
560 570 580 590 600
SVGHHLNKPE YIQMLMPPLI QKWNMLKDED KDLFPLLECL SSVATALQSG
610 620 630 640 650
FLPYCEPVYQ RCVNLVQKTL AQAMLNNAQP EQYEAPDKDF MIVALDLLSG
660 670 680 690 700
LAEGLGGNIE QLVARSNILT LMYQCMQDKM PEVRQSSFAL LGDLTKACFQ
710 720 730 740 750
HVKPCIADFM PILGTNLNPE FISVCNNATW AIGEISIQMG IEMQPYIPMV
760 770 780 790 800
LHQLVEIINR PNTPKTLLEN TAITIGRLGY VCPQEVAPML QQFIRPWCTS

LRNIRDN
Length:807
Mass (Da):91,737
Last modified:October 11, 2005 - v1
Checksum:i2FA86E259968BA04
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei807 – 8071Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC129085 Genomic DNA. No translation available.
AC154849 Genomic DNA. No translation available.
AK167049 mRNA. Translation: BAE39215.1.
UniGeneiMm.173286.

Genome annotation databases

EnsembliENSMUST00000179301; ENSMUSP00000136917; ENSMUSG00000009470.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC129085 Genomic DNA. No translation available.
AC154849 Genomic DNA. No translation available.
AK167049 mRNA. Translation: BAE39215.1.
UniGeneiMm.173286.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000105028.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000179301; ENSMUSP00000136917; ENSMUSG00000009470.

Organism-specific databases

MGIiMGI:2681523. Tnpo1.

Phylogenomic databases

eggNOGiKOG2023. Eukaryota.
ENOG410XPK2. LUCA.
GeneTreeiENSGT00550000074720.
HOVERGENiHBG058963.

Miscellaneous databases

ChiTaRSiTnpo1. mouse.
SOURCEiSearch...

Gene expression databases

ExpressionAtlasiQ3TKD0. baseline and differential.

Family and domain databases

Gene3Di1.25.10.10. 2 hits.
InterProiIPR011989. ARM-like.
IPR016024. ARM-type_fold.
IPR001494. Importin-beta_N.
[Graphical view]
PfamiPF03810. IBN_N. 1 hit.
[Graphical view]
SMARTiSM00913. IBN_N. 1 hit.
[Graphical view]
SUPFAMiSSF48371. SSF48371. 1 hit.
PROSITEiPS50166. IMPORTIN_B_NT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
  9. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  10. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
  11. Ensembl
    Submitted (AUG-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ3TKD0_MOUSE
AccessioniPrimary (citable) accession number: Q3TKD0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 8, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.