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Q3TGA3

- Q3TGA3_MOUSE

UniProt

Q3TGA3 - Q3TGA3_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Afp

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. ovulation from ovarian follicle Source: MGI
    2. progesterone metabolic process Source: MGI
    3. sexual reproduction Source: MGI
    4. SMAD protein signal transduction Source: MGI
    5. transport Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:AfpImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:87951. Afp.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: MGI
    2. extracellular space Source: MGI

    Expressioni

    Gene expression databases

    ArrayExpressiQ3TGA3.
    BgeeiQ3TGA3.
    GenevestigatoriQ3TGA3.

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG004207.
    InParanoidiQ3TGA3.

    Family and domain databases

    InterProiIPR000264. ALB/AFP/VDB.
    IPR001703. Alpha-fetoprotein.
    IPR020858. Serum_albumin-like.
    IPR021177. Serum_albumin/AFP.
    IPR020857. Serum_albumin_CS.
    IPR014760. Serum_albumin_N.
    [Graphical view]
    PfamiPF00273. Serum_albumin. 3 hits.
    [Graphical view]
    PIRSFiPIRSF002520. Serum_albumin_subgroup. 1 hit.
    PRINTSiPR00803. AFETOPROTEIN.
    PR00802. SERUMALBUMIN.
    SMARTiSM00103. ALBUMIN. 3 hits.
    [Graphical view]
    SUPFAMiSSF48552. SSF48552. 3 hits.
    PROSITEiPS00212. ALBUMIN_1. 2 hits.
    PS51438. ALBUMIN_2. 3 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    Q3TGA3-1 [UniParc]FASTAAdd to Basket

    « Hide

    IASTLDSSQC VTEKNVLSIA TITFTQFVPE ATEEEVNKMT SDVLAAMKKN    50
    SGDGCLESQL SVFLDEICHE TELSNKYGLS GCCSQSGVER HQCLLARKKT 100
    APASVPPFQF PEPAESCKAH EENRAVFMNR FIYEVSRRNP FMYAPAILSL 150
    AAQYDKVVLA CCKADNKEEC FQTKRASIAK ELREGSMLNE HVCSVIRKFG 200
    SRNLQATTII KLSQKLTEAN FTEIQKLALD VAHIHEECCQ GNSLECLQDG 250
    EKVMTYICSQ QNILSSKIAE CCKLPMIQLG FCIIHAENGV KPEGLSLNPS 300
    QFLGDRNFAQ FSSEEKIMFM ASFLHEYSRT HPNLPVSVIL RIAKTYQEIL 350
    EKCSQSGNLP GCQDNLEEEL QKHIEESQAL SKQSCALYQT LGDYKLQNLF 400
    LIGYTRKAPQ LTSAELIDLT GKMVSIASTC CQLSEEKWSG CGEGMADIFI 450
    GHLCIRNEAS PVNSGISHCC NSSYSNRRLC ITSFLRDETY APPPFSEDKF 500
    IFHKDLCQAQ GKALQTMKQE LLINLVKQKP ELTEEQLAAV TADFSGLLEK 550
    CCKAQDQEVC FTEEGPKLIS KTRDALGV 578
    Length:578
    Mass (Da):64,317
    Last modified:October 11, 2005 - v1
    Checksum:iC678EF5D63024C50
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK168818 mRNA. Translation: BAE40645.1.
    UniGeneiMm.358570.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK168818 mRNA. Translation: BAE40645.1 .
    UniGenei Mm.358570.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    MGIi MGI:87951. Afp.

    Phylogenomic databases

    HOVERGENi HBG004207.
    InParanoidi Q3TGA3.

    Miscellaneous databases

    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q3TGA3.
    Bgeei Q3TGA3.
    Genevestigatori Q3TGA3.

    Family and domain databases

    InterProi IPR000264. ALB/AFP/VDB.
    IPR001703. Alpha-fetoprotein.
    IPR020858. Serum_albumin-like.
    IPR021177. Serum_albumin/AFP.
    IPR020857. Serum_albumin_CS.
    IPR014760. Serum_albumin_N.
    [Graphical view ]
    Pfami PF00273. Serum_albumin. 3 hits.
    [Graphical view ]
    PIRSFi PIRSF002520. Serum_albumin_subgroup. 1 hit.
    PRINTSi PR00803. AFETOPROTEIN.
    PR00802. SERUMALBUMIN.
    SMARTi SM00103. ALBUMIN. 3 hits.
    [Graphical view ]
    SUPFAMi SSF48552. SSF48552. 3 hits.
    PROSITEi PS00212. ALBUMIN_1. 2 hits.
    PS51438. ALBUMIN_2. 3 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.
    6. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: AmnionImported.

    Entry informationi

    Entry nameiQ3TGA3_MOUSE
    AccessioniPrimary (citable) accession number: Q3TGA3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)