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Protein

Secretory carrier-associated membrane protein

Gene

Scamp1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Keywordsi

Biological processTransportUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Secretory carrier-associated membrane proteinUniRule annotation
Short name:
Secretory carrier membrane proteinUniRule annotation
Gene namesi
Name:Scamp1Imported
ORF Names:mCG_114101Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1349480. Scamp1.

Subcellular locationi

  • Membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei153 – 174HelicalUniRule annotationAdd BLAST22
Transmembranei186 – 206HelicalUniRule annotationAdd BLAST21
Transmembranei218 – 238HelicalUniRule annotationAdd BLAST21
Transmembranei258 – 282HelicalUniRule annotationAdd BLAST25

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSMUSG00000021687.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000022197.

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili82 – 114Sequence analysisAdd BLAST33

Sequence similaritiesi

Belongs to the SCAMP family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixUniRule annotation

Phylogenomic databases

eggNOGiKOG3088. Eukaryota.
ENOG410XSJN. LUCA.
HOVERGENiHBG071938.
KOiK19995.
OMAiQSAFKGN.
OrthoDBiEOG091G0ID2.

Family and domain databases

InterProiView protein in InterPro
IPR007273. SCAMP.
PANTHERiPTHR10687. PTHR10687. 1 hit.
PfamiView protein in Pfam
PF04144. SCAMP. 1 hit.

Sequencei

Sequence statusi: Complete.

Q3TD71-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDFDSNPFA DPDLNNPFKD PSVTQVTRNV PPGLDEYNPF SDSRTPPPGS
60 70 80 90 100
VKMPNVPNTQ PAIMKPTEEH PAYTQITKEH ALAQAELLKR QEELERKAAE
110 120 130 140 150
LDRREREMQN LSQHGRKNNW PPLPSNFPVG PCFYQDFSVD IPVEFQKTVK
160 170 180 190 200
LMYYLWMFHA VTLFLNIFGC LAWFCVDSSR AVDFGLSILW FLLFTPCSFV
210 220 230 240 250
CWYRPLYGAF RSDSSFRFFV FFFVYICQFA VHVLQAAGFH NWGNCGWISS
260 270 280 290 300
LTGLNKNIPV GIMMIIIAAL FTASAVISLV MFKKVHGLYR TTGASFEKAQ
310 320 330
QEFATGVMSN KTVQTAAANA ASTAATSAAQ NAFKGNQM
Length:338
Mass (Da):38,029
Last modified:October 11, 2005 - v1
Checksum:i7588A06064B23B9D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK170343 mRNA. Translation: BAE41733.1.
CH466567 Genomic DNA. Translation: EDL00923.1.
RefSeqiNP_083429.1. NM_029153.1.
UniGeneiMm.201455.

Genome annotation databases

GeneIDi107767.
KEGGimmu:107767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK170343 mRNA. Translation: BAE41733.1.
CH466567 Genomic DNA. Translation: EDL00923.1.
RefSeqiNP_083429.1. NM_029153.1.
UniGeneiMm.201455.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000022197.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi107767.
KEGGimmu:107767.

Organism-specific databases

CTDi9522.
MGIiMGI:1349480. Scamp1.

Phylogenomic databases

eggNOGiKOG3088. Eukaryota.
ENOG410XSJN. LUCA.
HOVERGENiHBG071938.
KOiK19995.
OMAiQSAFKGN.
OrthoDBiEOG091G0ID2.

Miscellaneous databases

ChiTaRSiScamp1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000021687.

Family and domain databases

InterProiView protein in InterPro
IPR007273. SCAMP.
PANTHERiPTHR10687. PTHR10687. 1 hit.
PfamiView protein in Pfam
PF04144. SCAMP. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ3TD71_MOUSE
AccessioniPrimary (citable) accession number: Q3TD71
Entry historyiIntegrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 15, 2017
This is version 91 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.