SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q3TC98

- Q3TC98_MOUSE

UniProt

Q3TC98 - Q3TC98_MOUSE

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: Putative uncharacterized protein
Gene
Vps39
Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. protein binding Source: MGI
  2. small GTPase regulator activity Source: InterPro

GO - Biological processi

  1. intracellular protein transport Source: InterPro
  2. vesicle-mediated transport Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Vps39Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2443189. Vps39.

Subcellular locationi

GO - Cellular componenti

  1. HOPS complex Source: Ensembl
  2. lysosomal membrane Source: Ensembl
Complete GO annotation...

Expressioni

Gene expression databases

ArrayExpressiQ3TC98.
BgeeiQ3TC98.
GenevestigatoriQ3TC98.

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG056493.
InParanoidiQ3TC98.

Family and domain databases

InterProiIPR001180. Citron.
IPR000547. Clathrin_H-chain/VPS_repeat.
IPR019452. VPS39/TGF_beta_rcpt-assoc_1.
IPR019453. VPS39/TGF_beta_rcpt-assoc_2.
[Graphical view]
PfamiPF00637. Clathrin. 1 hit.
PF00780. CNH. 1 hit.
PF10366. Vps39_1. 1 hit.
PF10367. Vps39_2. 1 hit.
[Graphical view]
PROSITEiPS50236. CHCR. 1 hit.
PS50219. CNH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3TC98-1 [UniParc]FASTAAdd to Basket

« Hide

MCVAVRKKLQ LYFWKDREFH ELQGDFSVPD VPKSMAWCEN SICVGFKRDY    50
YLIRVDGKGS IKELFPTGKQ LEPLVAPLAD GKVAVGQDDL TVVLNEEGIC 100
TQKCALNWTD IPVAMEHQPP YIVAVLPRYV EIRTLEPRLL VQSIELQRPR 150
FITSGGSNII YVASNHFVWR LIPVPMATQI QQLLQDKQFE LALQLAEMKD 200
DSDSEKQQQI HHIKNLYAFN LFCQKRFDES MQVFAKLGTD PTHVMGLYPD 250
LLPTDYRKQL QYPNPLPTLS GAELEKAHLA LIDYLTQKRS QLVKKLNDSD 300
HQSSTSPLME GTPTIKSKKK LLQIIDTTLL KCYLHTNVAL VAPLLRLENN 350
HCHIEESEHV LKKAHKYSEL IILYEKKGLH EKALQVLVDQ SKKANSPLKG 400
HERTVQYLQH LGTENLHLIF SYSVWVLRDF PEDGLKIFTE DLPEVESLPR 450
DRVLNFLIEN FKALAIPYLE HIIHVWEETG SQFHNCLIQL YCEKVQSLMK 500
DYLLSLPTGK SPVPAGEEGG ELGEYRQKLL MFLEISSHYD PGRLICDFPF 550
DGLLEERALL LGRMGKHEQA LFIYVHVLKD TKMAKEYCHK HYDQNKEGNK 600
DVYLSLLRMY LSPPSIHCLG PIKLELLEPQ ANLQAALQVL ELHYSKLDTT 650
KAINLLPANT QINDIRIFLE KVLEENAQKK RFNQVLKNLL HAEFLRVQEE 700
RILHQQVKCI ITEEKVCMVC KKKIGNSAFA RYPNGVVVHY FCSKEVNSAD 750
T 751
Length:751
Mass (Da):86,379
Last modified:October 11, 2005 - v1
Checksum:iC381DBA7691BB2F5
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK170831 mRNA. Translation: BAE42059.1.
UniGeneiMm.246131.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK170831 mRNA. Translation: BAE42059.1 .
UniGenei Mm.246131.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Organism-specific databases

MGIi MGI:2443189. Vps39.

Phylogenomic databases

HOVERGENi HBG056493.
InParanoidi Q3TC98.

Miscellaneous databases

SOURCEi Search...

Gene expression databases

ArrayExpressi Q3TC98.
Bgeei Q3TC98.
Genevestigatori Q3TC98.

Family and domain databases

InterProi IPR001180. Citron.
IPR000547. Clathrin_H-chain/VPS_repeat.
IPR019452. VPS39/TGF_beta_rcpt-assoc_1.
IPR019453. VPS39/TGF_beta_rcpt-assoc_2.
[Graphical view ]
Pfami PF00637. Clathrin. 1 hit.
PF00780. CNH. 1 hit.
PF10366. Vps39_1. 1 hit.
PF10367. Vps39_2. 1 hit.
[Graphical view ]
PROSITEi PS50236. CHCR. 1 hit.
PS50219. CNH. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.

Entry informationi

Entry nameiQ3TC98_MOUSE
AccessioniPrimary (citable) accession number: Q3TC98
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 11, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi