Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative uncharacterized protein

Gene

Vps39

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. small GTPase regulator activity Source: InterPro

GO - Biological processi

  1. intracellular protein transport Source: InterPro
  2. vesicle-mediated transport Source: GO_Central
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Vps39Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2443189. Vps39.

Subcellular locationi

GO - Cellular componenti

  1. HOPS complex Source: MGI
  2. lysosomal membrane Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

BgeeiQ3TC98.
ExpressionAtlasiQ3TC98. baseline.
GenevestigatoriQ3TC98.

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG056493.

Family and domain databases

InterProiIPR001180. Citron.
IPR000547. Clathrin_H-chain/VPS_repeat.
IPR019452. VPS39/TGF_beta_rcpt-assoc_1.
IPR019453. VPS39/TGF_beta_rcpt-assoc_2.
[Graphical view]
PfamiPF00637. Clathrin. 1 hit.
PF00780. CNH. 1 hit.
PF10366. Vps39_1. 1 hit.
PF10367. Vps39_2. 1 hit.
[Graphical view]
PROSITEiPS50236. CHCR. 1 hit.
PS50219. CNH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3TC98-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCVAVRKKLQ LYFWKDREFH ELQGDFSVPD VPKSMAWCEN SICVGFKRDY
60 70 80 90 100
YLIRVDGKGS IKELFPTGKQ LEPLVAPLAD GKVAVGQDDL TVVLNEEGIC
110 120 130 140 150
TQKCALNWTD IPVAMEHQPP YIVAVLPRYV EIRTLEPRLL VQSIELQRPR
160 170 180 190 200
FITSGGSNII YVASNHFVWR LIPVPMATQI QQLLQDKQFE LALQLAEMKD
210 220 230 240 250
DSDSEKQQQI HHIKNLYAFN LFCQKRFDES MQVFAKLGTD PTHVMGLYPD
260 270 280 290 300
LLPTDYRKQL QYPNPLPTLS GAELEKAHLA LIDYLTQKRS QLVKKLNDSD
310 320 330 340 350
HQSSTSPLME GTPTIKSKKK LLQIIDTTLL KCYLHTNVAL VAPLLRLENN
360 370 380 390 400
HCHIEESEHV LKKAHKYSEL IILYEKKGLH EKALQVLVDQ SKKANSPLKG
410 420 430 440 450
HERTVQYLQH LGTENLHLIF SYSVWVLRDF PEDGLKIFTE DLPEVESLPR
460 470 480 490 500
DRVLNFLIEN FKALAIPYLE HIIHVWEETG SQFHNCLIQL YCEKVQSLMK
510 520 530 540 550
DYLLSLPTGK SPVPAGEEGG ELGEYRQKLL MFLEISSHYD PGRLICDFPF
560 570 580 590 600
DGLLEERALL LGRMGKHEQA LFIYVHVLKD TKMAKEYCHK HYDQNKEGNK
610 620 630 640 650
DVYLSLLRMY LSPPSIHCLG PIKLELLEPQ ANLQAALQVL ELHYSKLDTT
660 670 680 690 700
KAINLLPANT QINDIRIFLE KVLEENAQKK RFNQVLKNLL HAEFLRVQEE
710 720 730 740 750
RILHQQVKCI ITEEKVCMVC KKKIGNSAFA RYPNGVVVHY FCSKEVNSAD

T
Length:751
Mass (Da):86,379
Last modified:October 11, 2005 - v1
Checksum:iC381DBA7691BB2F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK170831 mRNA. Translation: BAE42059.1.
UniGeneiMm.246131.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK170831 mRNA. Translation: BAE42059.1.
UniGeneiMm.246131.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

MGIiMGI:2443189. Vps39.

Phylogenomic databases

HOVERGENiHBG056493.

Miscellaneous databases

SOURCEiSearch...

Gene expression databases

BgeeiQ3TC98.
ExpressionAtlasiQ3TC98. baseline.
GenevestigatoriQ3TC98.

Family and domain databases

InterProiIPR001180. Citron.
IPR000547. Clathrin_H-chain/VPS_repeat.
IPR019452. VPS39/TGF_beta_rcpt-assoc_1.
IPR019453. VPS39/TGF_beta_rcpt-assoc_2.
[Graphical view]
PfamiPF00637. Clathrin. 1 hit.
PF00780. CNH. 1 hit.
PF10366. Vps39_1. 1 hit.
PF10367. Vps39_2. 1 hit.
[Graphical view]
PROSITEiPS50236. CHCR. 1 hit.
PS50219. CNH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2000)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2004)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.

Entry informationi

Entry nameiQ3TC98_MOUSE
AccessioniPrimary (citable) accession number: Q3TC98
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: February 4, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.