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Q3TC98 (Q3TC98_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Vps39 MGI 2443189
OrganismMus musculus (Mouse) EMBL BAE42059.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length751 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q3TC98 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: C381DBA7691BB2F5

FASTA75186,379
        10         20         30         40         50         60 
MCVAVRKKLQ LYFWKDREFH ELQGDFSVPD VPKSMAWCEN SICVGFKRDY YLIRVDGKGS 

        70         80         90        100        110        120 
IKELFPTGKQ LEPLVAPLAD GKVAVGQDDL TVVLNEEGIC TQKCALNWTD IPVAMEHQPP 

       130        140        150        160        170        180 
YIVAVLPRYV EIRTLEPRLL VQSIELQRPR FITSGGSNII YVASNHFVWR LIPVPMATQI 

       190        200        210        220        230        240 
QQLLQDKQFE LALQLAEMKD DSDSEKQQQI HHIKNLYAFN LFCQKRFDES MQVFAKLGTD 

       250        260        270        280        290        300 
PTHVMGLYPD LLPTDYRKQL QYPNPLPTLS GAELEKAHLA LIDYLTQKRS QLVKKLNDSD 

       310        320        330        340        350        360 
HQSSTSPLME GTPTIKSKKK LLQIIDTTLL KCYLHTNVAL VAPLLRLENN HCHIEESEHV 

       370        380        390        400        410        420 
LKKAHKYSEL IILYEKKGLH EKALQVLVDQ SKKANSPLKG HERTVQYLQH LGTENLHLIF 

       430        440        450        460        470        480 
SYSVWVLRDF PEDGLKIFTE DLPEVESLPR DRVLNFLIEN FKALAIPYLE HIIHVWEETG 

       490        500        510        520        530        540 
SQFHNCLIQL YCEKVQSLMK DYLLSLPTGK SPVPAGEEGG ELGEYRQKLL MFLEISSHYD 

       550        560        570        580        590        600 
PGRLICDFPF DGLLEERALL LGRMGKHEQA LFIYVHVLKD TKMAKEYCHK HYDQNKEGNK 

       610        620        630        640        650        660 
DVYLSLLRMY LSPPSIHCLG PIKLELLEPQ ANLQAALQVL ELHYSKLDTT KAINLLPANT 

       670        680        690        700        710        720 
QINDIRIFLE KVLEENAQKK RFNQVLKNLL HAEFLRVQEE RILHQQVKCI ITEEKVCMVC 

       730        740        750 
KKKIGNSAFA RYPNGVVVHY FCSKEVNSAD T 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
[6]Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. expand/collapse author list , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.
Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NOD EMBL BAE42059.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK170831 mRNA. Translation: BAE42059.1.
UniGeneMm.246131.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

MGIMGI:2443189. Vps39.

Phylogenomic databases

HOVERGENHBG056493.
InParanoidQ3TC98.

Gene expression databases

ArrayExpressQ3TC98.
BgeeQ3TC98.
GenevestigatorQ3TC98.

Family and domain databases

InterProIPR001180. Citron.
IPR000547. Clathrin_H-chain/VPS_repeat.
IPR019452. VPS39/TGF_beta_rcpt-assoc_1.
IPR019453. VPS39/TGF_beta_rcpt-assoc_2.
[Graphical view]
PfamPF00637. Clathrin. 1 hit.
PF00780. CNH. 1 hit.
PF10366. Vps39_1. 1 hit.
PF10367. Vps39_2. 1 hit.
[Graphical view]
PROSITEPS50236. CHCR. 1 hit.
PS50219. CNH. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ3TC98_MOUSE
AccessionPrimary (citable) accession number: Q3TC98
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: June 11, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)