Q3TC98 (Q3TC98_MOUSE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative uncharacterized protein EMBL BAE42059.1

Gene names

Name:

Vps39 MGI 2443189

Organism

Mus musculus (Mouse) EMBL BAE42059.1

Taxonomic identifier

10090 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length	751 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological_process	intracellular protein transport Inferred from electronic annotation. Source: InterPro vesicle-mediated transport Inferred from electronic annotation. Source: InterPro
Cellular_component	HOPS complex Inferred from electronic annotation. Source: Compara
Molecular_function	small GTPase regulator activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3TC98 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: C381DBA7691BB2F5	FASTA	751	86,379
	10 20 30 40 50 60 MCVAVRKKLQ LYFWKDREFH ELQGDFSVPD VPKSMAWCEN SICVGFKRDY YLIRVDGKGS 70 80 90 100 110 120 IKELFPTGKQ LEPLVAPLAD GKVAVGQDDL TVVLNEEGIC TQKCALNWTD IPVAMEHQPP 130 140 150 160 170 180 YIVAVLPRYV EIRTLEPRLL VQSIELQRPR FITSGGSNII YVASNHFVWR LIPVPMATQI 190 200 210 220 230 240 QQLLQDKQFE LALQLAEMKD DSDSEKQQQI HHIKNLYAFN LFCQKRFDES MQVFAKLGTD 250 260 270 280 290 300 PTHVMGLYPD LLPTDYRKQL QYPNPLPTLS GAELEKAHLA LIDYLTQKRS QLVKKLNDSD 310 320 330 340 350 360 HQSSTSPLME GTPTIKSKKK LLQIIDTTLL KCYLHTNVAL VAPLLRLENN HCHIEESEHV 370 380 390 400 410 420 LKKAHKYSEL IILYEKKGLH EKALQVLVDQ SKKANSPLKG HERTVQYLQH LGTENLHLIF 430 440 450 460 470 480 SYSVWVLRDF PEDGLKIFTE DLPEVESLPR DRVLNFLIEN FKALAIPYLE HIIHVWEETG 490 500 510 520 530 540 SQFHNCLIQL YCEKVQSLMK DYLLSLPTGK SPVPAGEEGG ELGEYRQKLL MFLEISSHYD 550 560 570 580 590 600 PGRLICDFPF DGLLEERALL LGRMGKHEQA LFIYVHVLKD TKMAKEYCHK HYDQNKEGNK 610 620 630 640 650 660 DVYLSLLRMY LSPPSIHCLG PIKLELLEPQ ANLQAALQVL ELHYSKLDTT KAINLLPANT 670 680 690 700 710 720 QINDIRIFLE KVLEENAQKK RFNQVLKNLL HAEFLRVQEE RILHQQVKCI ITEEKVCMVC 730 740 750 KKKIGNSAFA RYPNGVVVHY FCSKEVNSAD T

References

[1]	"High-efficiency full-length cDNA cloning." Carninci P., Hayashizaki Y. Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
[2]	"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes." Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y. Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
[3]	"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer." Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y. Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
[4]	"Functional annotation of a full-length mouse cDNA collection." The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Nature 409:685-690(2001) Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
[5]	"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team Nature 420:563-573(2002) Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
[6]	Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H. , Nomura K., Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y. Submitted (APR-2004) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
[7]	"The Transcriptional Landscape of the Mammalian Genome." The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) Science 309:1559-1563(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
[8]	"Antisense Transcription in the Mammalian Transcriptome." RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: NOD EMBL BAE42059.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AK170831 mRNA. Translation: BAE42059.1.
IPI	IPI00227698.
UniGene	Mm.246131.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Organism-specific databases
MGI	MGI:2443189. Vps39.
Phylogenomic databases
HOVERGEN	HBG056493.
InParanoid	Q3TC98.
Gene expression databases
ArrayExpress	Q3TC98.
Bgee	Q3TC98.
Genevestigator	Q3TC98.
Family and domain databases
InterPro	IPR001180. Citron. IPR000547. Clathrin_H-chain/VPS_repeat. IPR019452. VPS39/TGF_beta_rcpt-assoc_1. IPR019453. VPS39/TGF_beta_rcpt-assoc_2. [Graphical view]
Pfam	PF00637. Clathrin. 1 hit. PF00780. CNH. 1 hit. PF10366. Vps39_1. 1 hit. PF10367. Vps39_2. 1 hit. [Graphical view]
PROSITE	PS50219. CNH. 1 hit. [Graphical view]
ProtoNet	Search...
Other
SOURCE	Search...

Entry information

Entry name

Q3TC98_MOUSE

Accession

Primary (citable) accession number: Q3TC98

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	May 29, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)