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Q3TC98

- Q3TC98_MOUSE

UniProt

Q3TC98 - Q3TC98_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Vps39

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 54 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein binding Source: MGI
    2. small GTPase regulator activity Source: InterPro

    GO - Biological processi

    1. intracellular protein transport Source: InterPro
    2. vesicle-mediated transport Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:Vps39Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:2443189. Vps39.

    Subcellular locationi

    GO - Cellular componenti

    1. HOPS complex Source: Ensembl
    2. lysosomal membrane Source: Ensembl

    Expressioni

    Gene expression databases

    ArrayExpressiQ3TC98.
    BgeeiQ3TC98.
    GenevestigatoriQ3TC98.

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG056493.
    InParanoidiQ3TC98.

    Family and domain databases

    InterProiIPR001180. Citron.
    IPR000547. Clathrin_H-chain/VPS_repeat.
    IPR019452. VPS39/TGF_beta_rcpt-assoc_1.
    IPR019453. VPS39/TGF_beta_rcpt-assoc_2.
    [Graphical view]
    PfamiPF00637. Clathrin. 1 hit.
    PF00780. CNH. 1 hit.
    PF10366. Vps39_1. 1 hit.
    PF10367. Vps39_2. 1 hit.
    [Graphical view]
    PROSITEiPS50236. CHCR. 1 hit.
    PS50219. CNH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3TC98-1 [UniParc]FASTAAdd to Basket

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    MCVAVRKKLQ LYFWKDREFH ELQGDFSVPD VPKSMAWCEN SICVGFKRDY    50
    YLIRVDGKGS IKELFPTGKQ LEPLVAPLAD GKVAVGQDDL TVVLNEEGIC 100
    TQKCALNWTD IPVAMEHQPP YIVAVLPRYV EIRTLEPRLL VQSIELQRPR 150
    FITSGGSNII YVASNHFVWR LIPVPMATQI QQLLQDKQFE LALQLAEMKD 200
    DSDSEKQQQI HHIKNLYAFN LFCQKRFDES MQVFAKLGTD PTHVMGLYPD 250
    LLPTDYRKQL QYPNPLPTLS GAELEKAHLA LIDYLTQKRS QLVKKLNDSD 300
    HQSSTSPLME GTPTIKSKKK LLQIIDTTLL KCYLHTNVAL VAPLLRLENN 350
    HCHIEESEHV LKKAHKYSEL IILYEKKGLH EKALQVLVDQ SKKANSPLKG 400
    HERTVQYLQH LGTENLHLIF SYSVWVLRDF PEDGLKIFTE DLPEVESLPR 450
    DRVLNFLIEN FKALAIPYLE HIIHVWEETG SQFHNCLIQL YCEKVQSLMK 500
    DYLLSLPTGK SPVPAGEEGG ELGEYRQKLL MFLEISSHYD PGRLICDFPF 550
    DGLLEERALL LGRMGKHEQA LFIYVHVLKD TKMAKEYCHK HYDQNKEGNK 600
    DVYLSLLRMY LSPPSIHCLG PIKLELLEPQ ANLQAALQVL ELHYSKLDTT 650
    KAINLLPANT QINDIRIFLE KVLEENAQKK RFNQVLKNLL HAEFLRVQEE 700
    RILHQQVKCI ITEEKVCMVC KKKIGNSAFA RYPNGVVVHY FCSKEVNSAD 750
    T 751
    Length:751
    Mass (Da):86,379
    Last modified:October 11, 2005 - v1
    Checksum:iC381DBA7691BB2F5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK170831 mRNA. Translation: BAE42059.1.
    UniGeneiMm.246131.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK170831 mRNA. Translation: BAE42059.1 .
    UniGenei Mm.246131.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    MGIi MGI:2443189. Vps39.

    Phylogenomic databases

    HOVERGENi HBG056493.
    InParanoidi Q3TC98.

    Miscellaneous databases

    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q3TC98.
    Bgeei Q3TC98.
    Genevestigatori Q3TC98.

    Family and domain databases

    InterProi IPR001180. Citron.
    IPR000547. Clathrin_H-chain/VPS_repeat.
    IPR019452. VPS39/TGF_beta_rcpt-assoc_1.
    IPR019453. VPS39/TGF_beta_rcpt-assoc_2.
    [Graphical view ]
    Pfami PF00637. Clathrin. 1 hit.
    PF00780. CNH. 1 hit.
    PF10366. Vps39_1. 1 hit.
    PF10367. Vps39_2. 1 hit.
    [Graphical view ]
    PROSITEi PS50236. CHCR. 1 hit.
    PS50219. CNH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    6. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.

    Entry informationi

    Entry nameiQ3TC98_MOUSE
    AccessioniPrimary (citable) accession number: Q3TC98
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 54 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)