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Q3TA56

- Q3TA56_MOUSE

UniProt

Q3TA56 - Q3TA56_MOUSE

Protein
Submitted name:

P-selectin glycoprotein ligand 1

Gene

Selplg

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 62 (01 Oct 2014)
      Sequence version 1 (11 Oct 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein binding Source: MGI

    GO - Biological processi

    1. cellular response to interleukin-6 Source: Ensembl
    2. leukocyte tethering or rolling Source: MGI

    Keywords - Ligandi

    LectinImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    P-selectin glycoprotein ligand 1Imported
    Submitted name:
    Selectin, platelet (P-selectin) ligand, isoform CRA_bImported
    Gene namesi
    Name:SelplgImported
    Synonyms:SelplImported
    ORF Names:mCG_3553Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 5

    Organism-specific databases

    MGIiMGI:106689. Selplg.

    Subcellular locationi

    GO - Cellular componenti

    1. plasma membrane Source: InterPro

    Expressioni

    Gene expression databases

    GenevestigatoriQ3TA56.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00440000039754.
    HOGENOMiHOG000013048.
    HOVERGENiHBG061628.
    InParanoidiQ3TA56.
    KOiK06544.
    OMAiNYSPTEM.
    OrthoDBiEOG7CVPZ8.
    TreeFamiTF337792.

    Family and domain databases

    InterProiIPR026195. PSGL-1.
    [Graphical view]
    PANTHERiPTHR17384. PTHR17384. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q3TA56-1 [UniParc]FASTAAdd to Basket

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    MSPSFLVLLT ILGPGNSLQL QDPWGHETKE APGPVHLRER RQVVGDDDFE    50
    DPDYTYNTDP PELLKNVTNT VAAHPELPTT VVMLERDSTS AGTSERATEK 100
    IATTDPTAPG TGGTAVGMLS TDSATQWSLT SVETVQPAST EVETSQPAPM 150
    EAETSQPAPM EAETSQPAPM EAETSQPAPM EADTSQPAPM EADTSKPAPT 200
    EAETSKPAPT EAETSQPAPN EAETSKPAPT EAETSKPAPT EAETTQLPRI 250
    QAVKTLFTTS AATEVPSTEP TTMETASTES NESTIFLGPS VTHLPDSGLK 300
    KGLIVTPGNS PAPTLPGSSD LIPVKQCLLI ILILASLATI FLVCTVVLAV 350
    RLSRKTHMYP VRNYSPTEMI CISSLLPEGG DGAPVTANGG LPKVQDLKTE 400
    PSGDRDGDDL TLHSFLP 417
    Length:417
    Mass (Da):43,852
    Last modified:October 11, 2005 - v1
    Checksum:i8C1F72C515C5ED49
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159240 Genomic DNA. No translation available.
    AK172077 mRNA. Translation: BAE42814.1.
    CH466529 Genomic DNA. Translation: EDL19934.1.
    RefSeqiNP_033177.3. NM_009151.3.
    XP_006530292.1. XM_006530229.1.
    UniGeneiMm.332590.

    Genome annotation databases

    EnsembliENSMUST00000100874; ENSMUSP00000098436; ENSMUSG00000048163.
    GeneIDi20345.
    KEGGimmu:20345.
    UCSCiuc008yys.2. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC159240 Genomic DNA. No translation available.
    AK172077 mRNA. Translation: BAE42814.1 .
    CH466529 Genomic DNA. Translation: EDL19934.1 .
    RefSeqi NP_033177.3. NM_009151.3.
    XP_006530292.1. XM_006530229.1.
    UniGenei Mm.332590.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000100874 ; ENSMUSP00000098436 ; ENSMUSG00000048163 .
    GeneIDi 20345.
    KEGGi mmu:20345.
    UCSCi uc008yys.2. mouse.

    Organism-specific databases

    CTDi 6404.
    MGIi MGI:106689. Selplg.

    Phylogenomic databases

    GeneTreei ENSGT00440000039754.
    HOGENOMi HOG000013048.
    HOVERGENi HBG061628.
    InParanoidi Q3TA56.
    KOi K06544.
    OMAi NYSPTEM.
    OrthoDBi EOG7CVPZ8.
    TreeFami TF337792.

    Miscellaneous databases

    NextBioi 298181.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q3TA56.

    Family and domain databases

    InterProi IPR026195. PSGL-1.
    [Graphical view ]
    PANTHERi PTHR17384. PTHR17384. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    6. "A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome."
      Mural R.J., Adams M.D., Myers E.W., Smith H.O., Miklos G.L., Wides R., Halpern A., Li P.W., Sutton G.G., Nadeau J., Salzberg S.L., Holt R.A., Kodira C.D., Lu F., Chen L., Deng Z., Evangelista C.C., Gan W.
      , Heiman T.J., Li J., Li Z., Merkulov G.V., Milshina N.V., Naik A.K., Qi R., Shue B.C., Wang A., Wang J., Wang X., Yan X., Ye J., Yooseph S., Zhao Q., Zheng L., Zhu S.C., Biddick K., Bolanos R., Delcher A.L., Dew I.M., Fasulo D., Flanigan M.J., Huson D.H., Kravitz S.A., Miller J.R., Mobarry C.M., Reinert K., Remington K.A., Zhang Q., Zheng X.H., Nusskern D.R., Lai Z., Lei Y., Zhong W., Yao A., Guan P., Ji R.R., Gu Z., Wang Z.Y., Zhong F., Xiao C., Chiang C.C., Yandell M., Wortman J.R., Amanatides P.G., Hladun S.L., Pratts E.C., Johnson J.E., Dodson K.L., Woodford K.J., Evans C.A., Gropman B., Rusch D.B., Venter E., Wang M., Smith T.J., Houck J.T., Tompkins D.E., Haynes C., Jacob D., Chin S.H., Allen D.R., Dahlke C.E., Sanders R., Li K., Liu X., Levitsky A.A., Majoros W.H., Chen Q., Xia A.C., Lopez J.R., Donnelly M.T., Newman M.H., Glodek A., Kraft C.L., Nodell M., Ali F., An H.J., Baldwin-Pitts D., Beeson K.Y., Cai S., Carnes M., Carver A., Caulk P.M., Center A., Chen Y.H., Cheng M.L., Coyne M.D., Crowder M., Danaher S., Davenport L.B., Desilets R., Dietz S.M., Doup L., Dullaghan P., Ferriera S., Fosler C.R., Gire H.C., Gluecksmann A., Gocayne J.D., Gray J., Hart B., Haynes J., Hoover J., Howland T., Ibegwam C., Jalali M., Johns D., Kline L., Ma D.S., MacCawley S., Magoon A., Mann F., May D., McIntosh T.C., Mehta S., Moy L., Moy M.C., Murphy B.J., Murphy S.D., Nelson K.A., Nuri Z., Parker K.A., Prudhomme A.C., Puri V.N., Qureshi H., Raley J.C., Reardon M.S., Regier M.A., Rogers Y.H., Romblad D.L., Schutz J., Scott J.L., Scott R., Sitter C.D., Smallwood M., Sprague A.C., Stewart E., Strong R.V., Suh E., Sylvester K., Thomas R., Tint N.N., Tsonis C., Wang G., Wang G., Williams M.S., Williams S.M., Windsor S.M., Wolfe K., Wu M.M., Zaveri J., Chaturvedi K., Gabrielian A.E., Ke Z., Sun J., Subramanian G., Venter J.C., Pfannkoch C.M., Barnstead M., Stephenson L.D.
      Science 296:1661-1671(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    7. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    8. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    9. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NODImported.
      Tissue: Activated spleenImported.
    10. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: MixedImported.
    11. "The phagosomal proteome in interferon-gamma-activated macrophages."
      Trost M., English L., Lemieux S., Courcelles M., Desjardins M., Thibault P.
      Immunity 30:143-154(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    12. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    13. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ3TA56_MOUSE
    AccessioniPrimary (citable) accession number: Q3TA56
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: October 1, 2014
    This is version 62 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3