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Q3TA54

- Q3TA54_MOUSE

UniProt

Q3TA54 - Q3TA54_MOUSE

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Protein
Submitted name:

Putative uncharacterized protein

Gene

Vapb

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. structural molecule activity Source: InterPro

GO - Biological processi

  1. activation of signaling protein activity involved in unfolded protein response Source: Ensembl
  2. cellular calcium ion homeostasis Source: Ensembl
  3. modulation by virus of host morphology or physiology Source: Ensembl
  4. positive regulation of viral genome replication Source: Ensembl
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_198151. Sphingolipid de novo biosynthesis.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:VapbImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:1928744. Vapb.

Subcellular locationi

GO - Cellular componenti

  1. endoplasmic reticulum membrane Source: Ensembl
  2. Golgi apparatus Source: Ensembl
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiQ3TA54.

Expressioni

Gene expression databases

BgeeiQ3TA54.
ExpressionAtlasiQ3TA54. baseline and differential.
GenevestigatoriQ3TA54.

Family & Domainsi

Phylogenomic databases

HOVERGENiHBG028551.

Family and domain databases

Gene3Di2.60.40.360. 1 hit.
InterProiIPR000535. MSP_dom.
IPR008962. PapD-like.
IPR016763. Vesicle-associated_membrane.
[Graphical view]
PfamiPF00635. Motile_Sperm. 1 hit.
[Graphical view]
PIRSFiPIRSF019693. VAMP-associated. 1 hit.
SUPFAMiSSF49354. SSF49354. 1 hit.
PROSITEiPS50202. MSP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q3TA54-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
QHELKFRGPF TDVVTTNLKL GNPTDRNVCF KVKTTAPRRY CVRPNSGVID
60 70 80 90 100
AGASLNVSVM LQPFDYDPNE KSKHKFMVQS MFAPPDTSDM EAVWKEAKPE
110 120 130 140 150
DLMDSKLRCV FELPAENAKP HDVEINKIIP TSASKTEAPA AAKSLTSPLD
160 170 180 190 200
DTEVKKEEDG LRVRKAMPSN SPVAALAATG KEEGLSARLL ALVVLFFIVG

VIIGKIAL
Length:208
Mass (Da):22,737
Last modified:October 11, 2005 - v1
Checksum:iD14686AC7BCBDB05
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK172080 mRNA. Translation: BAE42816.1.
UniGeneiMm.260456.

Genome annotation databases

UCSCiuc012ckt.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK172080 mRNA. Translation: BAE42816.1 .
UniGenei Mm.260456.

3D structure databases

ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q3TA54.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

UCSCi uc012ckt.1. mouse.

Organism-specific databases

MGIi MGI:1928744. Vapb.

Phylogenomic databases

HOVERGENi HBG028551.

Enzyme and pathway databases

Reactomei REACT_198151. Sphingolipid de novo biosynthesis.

Miscellaneous databases

ChiTaRSi Vapb. mouse.
SOURCEi Search...

Gene expression databases

Bgeei Q3TA54.
ExpressionAtlasi Q3TA54. baseline and differential.
Genevestigatori Q3TA54.

Family and domain databases

Gene3Di 2.60.40.360. 1 hit.
InterProi IPR000535. MSP_dom.
IPR008962. PapD-like.
IPR016763. Vesicle-associated_membrane.
[Graphical view ]
Pfami PF00635. Motile_Sperm. 1 hit.
[Graphical view ]
PIRSFi PIRSF019693. VAMP-associated. 1 hit.
SUPFAMi SSF49354. SSF49354. 1 hit.
PROSITEi PS50202. MSP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  4. "Functional annotation of a full-length mouse cDNA collection."
    The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
    Nature 409:685-690(2001)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  5. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  6. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NODImported.
    Tissue: Activated spleenImported.

Entry informationi

Entry nameiQ3TA54_MOUSE
AccessioniPrimary (citable) accession number: Q3TA54
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: November 26, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)