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Q3T921

- Q3T921_RAT

UniProt

Q3T921 - Q3T921_RAT

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Protein
Submitted name:

Zfhx1b zinc finger homeobox 1b

Gene

Zeb2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. DNA binding Source: InterPro
  2. metal ion binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Zfhx1b zinc finger homeobox 1bImported
Gene namesi
Name:Zeb2Imported
Synonyms:Zfhx1bImported, ZfhxibImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1307272. Zeb2.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusImported

Expressioni

Gene expression databases

GenevestigatoriQ3T921.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006350.

Structurei

3D structure databases

ProteinModelPortaliQ3T921.
SMRiQ3T921. Positions 648-705.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG5048.
HOGENOMiHOG000264256.
HOVERGENiHBG004697.
KOiK09299.
PhylomeDBiQ3T921.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR008598. Di19_Zn_binding.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF05605. zf-Di19. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
SM00355. ZnF_C2H2. 8 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3T921-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKQPIMADGP RCKRRKQANP RRKNVVNYDN VVDAGSETDE EDKLHIAEDD
60 70 80 90 100
GIANPLDQET SPASMPNHES SPHMSQGLLP REEEEDEIRE SVVEHSWHSG
110 120 130 140 150
EILQASVDGP EEMKEDYDAL GPEATIQTTI NNGTVKNANC TSDFEEYFAK
160 170 180 190 200
RKLEERDGHA VSIEEYLQRS DTAIIYPEAP EELSRLGTPE ANGQEENDLP
210 220 230 240 250
PGTPDAFAQL LTCPYCDRGY KRLTSLKEHI KYRHEKNEEN FSCPLCSYTF
260 270 280 290 300
AYRTQLERHM VTHKPGTDQH QMLTQGAGNR KFKCTECGKA FKYKHHLKEH
310 320 330 340 350
LRIHSGEKPY ECPNCKKRFS HSGSYSSHIS SKKCIGLISV NGRMRNNIKT
360 370 380 390 400
GSSPNSVSSS PTNSAITQLR NKLENGKPLS MSEQTGLLKI KTEPLDFNDY
410 420 430 440 450
KVLMATHGFS GTSPFMNGGL GATSPLGVHP SAQSPMQHLG VGLEAPLLGF
460 470 480 490 500
PTMNSNLSEV QKVLQIVDNT VSRQKMDCKT EDISKLKGYH MKDPCSQPEE
510 520 530 540 550
QGVTSPSIPA VGLPVVSHNG ATKSIIDYTL EKVNEAKACL QSLTTDSRRQ
560 570 580 590 600
ISNIKKEKLR TLIDLVTDDK MIENHSIPTP FSCQFCKESF PGPIPLHQHE
610 620 630 640 650
RYLCKMNEEI KAVLQPHENI VPNKAGVFVD NKALLLSSVL SEKGLTSPIN
660 670 680 690 700
PYKDHMSVLK AYYAMNMEPN SDELLKISIA VGLPQEFVKE WFEQRKVYQY
710 720 730 740 750
SSSRSPSLER NSKPLAPNSN PTTKDSLLPR SPVKPMDSIT SPSIAELHNS
760 770 780 790 800
VTSCDPPLRL TKSSHFTNTK AVDKLDHSRS NTPSPLNLSS TSSKNSHSSS
810 820 830 840 850
YTPNSFSSEE LQAEPLDLSL PKQMREPKSI IATKNKTKAT SISLDHNSVS
860 870 880 890 900
SSSENSDEPL NLTFIKKEFS NSNNLDNKST NPVFGMNPFS AKPLYTALPP
910 920 930 940 950
QSAFPPATFM PPVQTSIPGL RPYPGLDQMS FLPHMAYTYP TGAATFADMQ
960 970 980 990 1000
QRRKYQRKQG FQGELLDGAQ DYMSGLDDLT DSDSCLSRKK IKKTESGMYA
1010 1020 1030 1040 1050
CDLCDKTFQK SSSLLRHKYE HTGKRPHQCQ ICKKAFKHKH HLIEHSRLHS
1060 1070 1080 1090 1100
GEKPYQCDKC GKRFSHSGSY SQHMNHRYSY CKREAEEREA AEREAREKGH
1110 1120 1130 1140 1150
LEPTELLMNR AYLQSITPQG YSDSEERESM PRDGESEKEH EKEGEEGYGK
1160 1170 1180 1190 1200
LRRRDGDEEE EEEEEESENK SMDTDPETIR DEEETGDHSM DDSSEDGKME
1210
TKSDHEEDNM EDGME
Length:1,215
Mass (Da):136,498
Last modified:October 11, 2005 - v1
Checksum:iC18AFA412EF4C506
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM084708 mRNA. Translation: CAJ29798.1.
RefSeqiNP_001028873.1. NM_001033701.1.
UniGeneiRn.59710.

Genome annotation databases

GeneIDi311071.
KEGGirno:311071.
UCSCiRGD:1307272. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM084708 mRNA. Translation: CAJ29798.1 .
RefSeqi NP_001028873.1. NM_001033701.1.
UniGenei Rn.59710.

3D structure databases

ProteinModelPortali Q3T921.
SMRi Q3T921. Positions 648-705.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000006350.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 311071.
KEGGi rno:311071.
UCSCi RGD:1307272. rat.

Organism-specific databases

CTDi 9839.
RGDi 1307272. Zeb2.

Phylogenomic databases

eggNOGi COG5048.
HOGENOMi HOG000264256.
HOVERGENi HBG004697.
KOi K09299.
PhylomeDBi Q3T921.

Miscellaneous databases

NextBioi 662952.

Gene expression databases

Genevestigatori Q3T921.

Family and domain databases

Gene3Di 3.30.160.60. 5 hits.
InterProi IPR008598. Di19_Zn_binding.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF05605. zf-Di19. 1 hit.
[Graphical view ]
SMARTi SM00389. HOX. 1 hit.
SM00355. ZnF_C2H2. 8 hits.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Role of Zfhx1b in rat development."
    Carter D.A.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Sprague DawleyImported.
    Tissue: RetinaImported.

Entry informationi

Entry nameiQ3T921_RAT
AccessioniPrimary (citable) accession number: Q3T921
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: October 29, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)