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Q3T921 (Q3T921_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:Zeb2 RGD 1307272
Synonyms:Zfhx1b RGD 1307272, Zfhxib EMBL CAJ29798.1
OrganismRattus norvegicus (Rat) EMBL CAJ29798.1
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length1215 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q3T921 [UniParc].

Last modified October 11, 2005. Version 1.
Checksum: C18AFA412EF4C506

FASTA1,215136,498
        10         20         30         40         50         60 
MKQPIMADGP RCKRRKQANP RRKNVVNYDN VVDAGSETDE EDKLHIAEDD GIANPLDQET 

        70         80         90        100        110        120 
SPASMPNHES SPHMSQGLLP REEEEDEIRE SVVEHSWHSG EILQASVDGP EEMKEDYDAL 

       130        140        150        160        170        180 
GPEATIQTTI NNGTVKNANC TSDFEEYFAK RKLEERDGHA VSIEEYLQRS DTAIIYPEAP 

       190        200        210        220        230        240 
EELSRLGTPE ANGQEENDLP PGTPDAFAQL LTCPYCDRGY KRLTSLKEHI KYRHEKNEEN 

       250        260        270        280        290        300 
FSCPLCSYTF AYRTQLERHM VTHKPGTDQH QMLTQGAGNR KFKCTECGKA FKYKHHLKEH 

       310        320        330        340        350        360 
LRIHSGEKPY ECPNCKKRFS HSGSYSSHIS SKKCIGLISV NGRMRNNIKT GSSPNSVSSS 

       370        380        390        400        410        420 
PTNSAITQLR NKLENGKPLS MSEQTGLLKI KTEPLDFNDY KVLMATHGFS GTSPFMNGGL 

       430        440        450        460        470        480 
GATSPLGVHP SAQSPMQHLG VGLEAPLLGF PTMNSNLSEV QKVLQIVDNT VSRQKMDCKT 

       490        500        510        520        530        540 
EDISKLKGYH MKDPCSQPEE QGVTSPSIPA VGLPVVSHNG ATKSIIDYTL EKVNEAKACL 

       550        560        570        580        590        600 
QSLTTDSRRQ ISNIKKEKLR TLIDLVTDDK MIENHSIPTP FSCQFCKESF PGPIPLHQHE 

       610        620        630        640        650        660 
RYLCKMNEEI KAVLQPHENI VPNKAGVFVD NKALLLSSVL SEKGLTSPIN PYKDHMSVLK 

       670        680        690        700        710        720 
AYYAMNMEPN SDELLKISIA VGLPQEFVKE WFEQRKVYQY SSSRSPSLER NSKPLAPNSN 

       730        740        750        760        770        780 
PTTKDSLLPR SPVKPMDSIT SPSIAELHNS VTSCDPPLRL TKSSHFTNTK AVDKLDHSRS 

       790        800        810        820        830        840 
NTPSPLNLSS TSSKNSHSSS YTPNSFSSEE LQAEPLDLSL PKQMREPKSI IATKNKTKAT 

       850        860        870        880        890        900 
SISLDHNSVS SSSENSDEPL NLTFIKKEFS NSNNLDNKST NPVFGMNPFS AKPLYTALPP 

       910        920        930        940        950        960 
QSAFPPATFM PPVQTSIPGL RPYPGLDQMS FLPHMAYTYP TGAATFADMQ QRRKYQRKQG 

       970        980        990       1000       1010       1020 
FQGELLDGAQ DYMSGLDDLT DSDSCLSRKK IKKTESGMYA CDLCDKTFQK SSSLLRHKYE 

      1030       1040       1050       1060       1070       1080 
HTGKRPHQCQ ICKKAFKHKH HLIEHSRLHS GEKPYQCDKC GKRFSHSGSY SQHMNHRYSY 

      1090       1100       1110       1120       1130       1140 
CKREAEEREA AEREAREKGH LEPTELLMNR AYLQSITPQG YSDSEERESM PRDGESEKEH 

      1150       1160       1170       1180       1190       1200 
EKEGEEGYGK LRRRDGDEEE EEEEEESENK SMDTDPETIR DEEETGDHSM DDSSEDGKME 

      1210 
TKSDHEEDNM EDGME 

« Hide

References

[1]"Role of Zfhx1b in rat development."
Carter D.A.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Sprague Dawley EMBL CAJ29798.1.
Tissue: Retina EMBL CAJ29798.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AM084708 mRNA. Translation: CAJ29798.1.
RefSeqNP_001028873.1. NM_001033701.1.
UniGeneRn.59710.

3D structure databases

ProteinModelPortalQ3T921.
SMRQ3T921. Positions 648-705.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING10116.ENSRNOP00000006350.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID311071.
KEGGrno:311071.
UCSCRGD:1307272. rat.

Organism-specific databases

CTD9839.
RGD1307272. Zeb2.

Phylogenomic databases

eggNOGCOG5048.
HOGENOMHOG000264256.
HOVERGENHBG004697.
InParanoidQ3T921.
KOK09299.
PhylomeDBQ3T921.

Gene expression databases

GenevestigatorQ3T921.

Family and domain databases

Gene3D3.30.160.60. 5 hits.
InterProIPR008598. Di19_Zn_binding.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamPF05605. zf-Di19. 1 hit.
[Graphical view]
SMARTSM00389. HOX. 1 hit.
SM00355. ZnF_C2H2. 8 hits.
[Graphical view]
SUPFAMSSF46689. SSF46689. 1 hit.
PROSITEPS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio662952.

Entry information

Entry nameQ3T921_RAT
AccessionPrimary (citable) accession number: Q3T921
Entry history
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: April 16, 2014
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)