Q3T921 (Q3T921_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Zfhx1b zinc finger homeobox 1b EMBL CAJ29798.1

Gene names

Name:	Zeb2 RGD 1307272
Synonyms:	Zfhx1b RGD 1307272, Zfhxib EMBL CAJ29798.1

Organism

Rattus norvegicus (Rat) EMBL CAJ29798.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	1215 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Cellular component	Nucleus EMBL CAJ29798.1
Gene Ontology (GO)
Cellular_component	nucleus Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	sequence-specific DNA binding Inferred from electronic annotation. Source: InterPro sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q3T921 [UniParc]. Last modified October 11, 2005. Version 1. Checksum: C18AFA412EF4C506	FASTA	1,215	136,498
	10 20 30 40 50 60 MKQPIMADGP RCKRRKQANP RRKNVVNYDN VVDAGSETDE EDKLHIAEDD GIANPLDQET 70 80 90 100 110 120 SPASMPNHES SPHMSQGLLP REEEEDEIRE SVVEHSWHSG EILQASVDGP EEMKEDYDAL 130 140 150 160 170 180 GPEATIQTTI NNGTVKNANC TSDFEEYFAK RKLEERDGHA VSIEEYLQRS DTAIIYPEAP 190 200 210 220 230 240 EELSRLGTPE ANGQEENDLP PGTPDAFAQL LTCPYCDRGY KRLTSLKEHI KYRHEKNEEN 250 260 270 280 290 300 FSCPLCSYTF AYRTQLERHM VTHKPGTDQH QMLTQGAGNR KFKCTECGKA FKYKHHLKEH 310 320 330 340 350 360 LRIHSGEKPY ECPNCKKRFS HSGSYSSHIS SKKCIGLISV NGRMRNNIKT GSSPNSVSSS 370 380 390 400 410 420 PTNSAITQLR NKLENGKPLS MSEQTGLLKI KTEPLDFNDY KVLMATHGFS GTSPFMNGGL 430 440 450 460 470 480 GATSPLGVHP SAQSPMQHLG VGLEAPLLGF PTMNSNLSEV QKVLQIVDNT VSRQKMDCKT 490 500 510 520 530 540 EDISKLKGYH MKDPCSQPEE QGVTSPSIPA VGLPVVSHNG ATKSIIDYTL EKVNEAKACL 550 560 570 580 590 600 QSLTTDSRRQ ISNIKKEKLR TLIDLVTDDK MIENHSIPTP FSCQFCKESF PGPIPLHQHE 610 620 630 640 650 660 RYLCKMNEEI KAVLQPHENI VPNKAGVFVD NKALLLSSVL SEKGLTSPIN PYKDHMSVLK 670 680 690 700 710 720 AYYAMNMEPN SDELLKISIA VGLPQEFVKE WFEQRKVYQY SSSRSPSLER NSKPLAPNSN 730 740 750 760 770 780 PTTKDSLLPR SPVKPMDSIT SPSIAELHNS VTSCDPPLRL TKSSHFTNTK AVDKLDHSRS 790 800 810 820 830 840 NTPSPLNLSS TSSKNSHSSS YTPNSFSSEE LQAEPLDLSL PKQMREPKSI IATKNKTKAT 850 860 870 880 890 900 SISLDHNSVS SSSENSDEPL NLTFIKKEFS NSNNLDNKST NPVFGMNPFS AKPLYTALPP 910 920 930 940 950 960 QSAFPPATFM PPVQTSIPGL RPYPGLDQMS FLPHMAYTYP TGAATFADMQ QRRKYQRKQG 970 980 990 1000 1010 1020 FQGELLDGAQ DYMSGLDDLT DSDSCLSRKK IKKTESGMYA CDLCDKTFQK SSSLLRHKYE 1030 1040 1050 1060 1070 1080 HTGKRPHQCQ ICKKAFKHKH HLIEHSRLHS GEKPYQCDKC GKRFSHSGSY SQHMNHRYSY 1090 1100 1110 1120 1130 1140 CKREAEEREA AEREAREKGH LEPTELLMNR AYLQSITPQG YSDSEERESM PRDGESEKEH 1150 1160 1170 1180 1190 1200 EKEGEEGYGK LRRRDGDEEE EEEEEESENK SMDTDPETIR DEEETGDHSM DDSSEDGKME 1210 TKSDHEEDNM EDGME

References

[1]	"Role of Zfhx1b in rat development." Carter D.A. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague Dawley EMBL CAJ29798.1. Tissue: Retina EMBL CAJ29798.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AM084708 mRNA. Translation: CAJ29798.1.
IPI	IPI00207675.
RefSeq	NP_001028873.1. NM_001033701.1.
UniGene	Rn.59710.
3D structure databases
ProteinModelPortal	Q3T921.
SMR	Q3T921. Positions 648-705.
ModBase	Search...
Protein-protein interaction databases
STRING	10116.ENSRNOP00000006350.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	311071.
KEGG	rno:311071.
UCSC	RGD:1307272. rat.
Organism-specific databases
CTD	9839.
RGD	1307272. Zeb2.
Phylogenomic databases
eggNOG	COG5048.
HOGENOM	HOG000264256.
HOVERGEN	HBG004697.
InParanoid	Q3T921.
KO	K09299.
OrthoDB	EOG4KD6K7.
Gene expression databases
Genevestigator	Q3T921.
Family and domain databases
Gene3D	3.30.160.60. 5 hits.
InterPro	IPR001356. Homeodomain. IPR009057. Homeodomain-like. IPR007087. Znf_C2H2. IPR015880. Znf_C2H2-like. IPR013087. Znf_C2H2/integrase_DNA-bd. [Graphical view]
Pfam	PF00096. zf-C2H2. 1 hit. [Graphical view]
SMART	SM00389. HOX. 1 hit. SM00355. ZnF_C2H2. 8 hits. [Graphical view]
SUPFAM	SSF46689. Homeodomain_like. 1 hit.
PROSITE	PS00028. ZINC_FINGER_C2H2_1. 5 hits. PS50157. ZINC_FINGER_C2H2_2. 6 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	662952.

Entry information

Entry name

Q3T921_RAT

Accession

Primary (citable) accession number: Q3T921

Entry history

Integrated into UniProtKB/TrEMBL:	October 11, 2005
Last sequence update:	October 11, 2005
Last modified:	April 3, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)