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Q3T921

- Q3T921_RAT

UniProt

Q3T921 - Q3T921_RAT

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Protein
Submitted name:

Zfhx1b zinc finger homeobox 1b

Gene
Zeb2, Zfhx1b, Zfhxib
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. sequence-specific DNA binding Source: InterPro
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Zfhx1b zinc finger homeobox 1bImported
Gene namesi
Name:Zeb2Imported
Synonyms:Zfhx1bImported, ZfhxibImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1307272. Zeb2.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

NucleusImported

Expressioni

Gene expression databases

GenevestigatoriQ3T921.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000006350.

Structurei

3D structure databases

ProteinModelPortaliQ3T921.
SMRiQ3T921. Positions 648-705.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG5048.
HOGENOMiHOG000264256.
HOVERGENiHBG004697.
InParanoidiQ3T921.
KOiK09299.
PhylomeDBiQ3T921.

Family and domain databases

Gene3Di3.30.160.60. 5 hits.
InterProiIPR008598. Di19_Zn_binding.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF05605. zf-Di19. 1 hit.
[Graphical view]
SMARTiSM00389. HOX. 1 hit.
SM00355. ZnF_C2H2. 8 hits.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q3T921-1 [UniParc]FASTAAdd to Basket

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MKQPIMADGP RCKRRKQANP RRKNVVNYDN VVDAGSETDE EDKLHIAEDD     50
GIANPLDQET SPASMPNHES SPHMSQGLLP REEEEDEIRE SVVEHSWHSG 100
EILQASVDGP EEMKEDYDAL GPEATIQTTI NNGTVKNANC TSDFEEYFAK 150
RKLEERDGHA VSIEEYLQRS DTAIIYPEAP EELSRLGTPE ANGQEENDLP 200
PGTPDAFAQL LTCPYCDRGY KRLTSLKEHI KYRHEKNEEN FSCPLCSYTF 250
AYRTQLERHM VTHKPGTDQH QMLTQGAGNR KFKCTECGKA FKYKHHLKEH 300
LRIHSGEKPY ECPNCKKRFS HSGSYSSHIS SKKCIGLISV NGRMRNNIKT 350
GSSPNSVSSS PTNSAITQLR NKLENGKPLS MSEQTGLLKI KTEPLDFNDY 400
KVLMATHGFS GTSPFMNGGL GATSPLGVHP SAQSPMQHLG VGLEAPLLGF 450
PTMNSNLSEV QKVLQIVDNT VSRQKMDCKT EDISKLKGYH MKDPCSQPEE 500
QGVTSPSIPA VGLPVVSHNG ATKSIIDYTL EKVNEAKACL QSLTTDSRRQ 550
ISNIKKEKLR TLIDLVTDDK MIENHSIPTP FSCQFCKESF PGPIPLHQHE 600
RYLCKMNEEI KAVLQPHENI VPNKAGVFVD NKALLLSSVL SEKGLTSPIN 650
PYKDHMSVLK AYYAMNMEPN SDELLKISIA VGLPQEFVKE WFEQRKVYQY 700
SSSRSPSLER NSKPLAPNSN PTTKDSLLPR SPVKPMDSIT SPSIAELHNS 750
VTSCDPPLRL TKSSHFTNTK AVDKLDHSRS NTPSPLNLSS TSSKNSHSSS 800
YTPNSFSSEE LQAEPLDLSL PKQMREPKSI IATKNKTKAT SISLDHNSVS 850
SSSENSDEPL NLTFIKKEFS NSNNLDNKST NPVFGMNPFS AKPLYTALPP 900
QSAFPPATFM PPVQTSIPGL RPYPGLDQMS FLPHMAYTYP TGAATFADMQ 950
QRRKYQRKQG FQGELLDGAQ DYMSGLDDLT DSDSCLSRKK IKKTESGMYA 1000
CDLCDKTFQK SSSLLRHKYE HTGKRPHQCQ ICKKAFKHKH HLIEHSRLHS 1050
GEKPYQCDKC GKRFSHSGSY SQHMNHRYSY CKREAEEREA AEREAREKGH 1100
LEPTELLMNR AYLQSITPQG YSDSEERESM PRDGESEKEH EKEGEEGYGK 1150
LRRRDGDEEE EEEEEESENK SMDTDPETIR DEEETGDHSM DDSSEDGKME 1200
TKSDHEEDNM EDGME 1215
Length:1,215
Mass (Da):136,498
Last modified:October 11, 2005 - v1
Checksum:iC18AFA412EF4C506
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM084708 mRNA. Translation: CAJ29798.1.
RefSeqiNP_001028873.1. NM_001033701.1.
UniGeneiRn.59710.

Genome annotation databases

GeneIDi311071.
KEGGirno:311071.
UCSCiRGD:1307272. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AM084708 mRNA. Translation: CAJ29798.1 .
RefSeqi NP_001028873.1. NM_001033701.1.
UniGenei Rn.59710.

3D structure databases

ProteinModelPortali Q3T921.
SMRi Q3T921. Positions 648-705.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 10116.ENSRNOP00000006350.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 311071.
KEGGi rno:311071.
UCSCi RGD:1307272. rat.

Organism-specific databases

CTDi 9839.
RGDi 1307272. Zeb2.

Phylogenomic databases

eggNOGi COG5048.
HOGENOMi HOG000264256.
HOVERGENi HBG004697.
InParanoidi Q3T921.
KOi K09299.
PhylomeDBi Q3T921.

Miscellaneous databases

NextBioi 662952.

Gene expression databases

Genevestigatori Q3T921.

Family and domain databases

Gene3Di 3.30.160.60. 5 hits.
InterProi IPR008598. Di19_Zn_binding.
IPR001356. Homeobox_dom.
IPR009057. Homeodomain-like.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view ]
Pfami PF05605. zf-Di19. 1 hit.
[Graphical view ]
SMARTi SM00389. HOX. 1 hit.
SM00355. ZnF_C2H2. 8 hits.
[Graphical view ]
SUPFAMi SSF46689. SSF46689. 1 hit.
PROSITEi PS00028. ZINC_FINGER_C2H2_1. 5 hits.
PS50157. ZINC_FINGER_C2H2_2. 6 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Role of Zfhx1b in rat development."
    Carter D.A.
    Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Sprague DawleyImported.
    Tissue: RetinaImported.

Entry informationi

Entry nameiQ3T921_RAT
AccessioniPrimary (citable) accession number: Q3T921
Entry historyi
Integrated into UniProtKB/TrEMBL: October 11, 2005
Last sequence update: October 11, 2005
Last modified: July 9, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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