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Q3T921

- Q3T921_RAT

UniProt

Q3T921 - Q3T921_RAT

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Protein
Submitted name: Zfhx1b zinc finger homeobox 1b
Gene
Zeb2, Zfhx1b, Zfhxib
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. metal ion binding Source: InterPro
  2. sequence-specific DNA binding Source: InterPro
  3. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

GO - Biological processi

    Complete GO annotation...

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Zfhx1b zinc finger homeobox 1bImported
    Gene namesi
    Name:Zeb2Imported
    Synonyms:Zfhx1bImported, ZfhxibImported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

    Organism-specific databases

    RGDi1307272. Zeb2.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-KW
    Complete GO annotation...

    Keywords - Cellular componenti

    NucleusImported

    Expressioni

    Gene expression databases

    GenevestigatoriQ3T921.

    Interactioni

    Protein-protein interaction databases

    STRINGi10116.ENSRNOP00000006350.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3T921.
    SMRiQ3T921. Positions 648-705.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG5048.
    HOGENOMiHOG000264256.
    HOVERGENiHBG004697.
    InParanoidiQ3T921.
    KOiK09299.
    PhylomeDBiQ3T921.

    Family and domain databases

    Gene3Di3.30.160.60. 5 hits.
    InterProiIPR008598. Di19_Zn_binding.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    PfamiPF05605. zf-Di19. 1 hit.
    [Graphical view]
    SMARTiSM00389. HOX. 1 hit.
    SM00355. ZnF_C2H2. 8 hits.
    [Graphical view]
    SUPFAMiSSF46689. SSF46689. 1 hit.
    PROSITEiPS00028. ZINC_FINGER_C2H2_1. 5 hits.
    PS50157. ZINC_FINGER_C2H2_2. 6 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3T921-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKQPIMADGP RCKRRKQANP RRKNVVNYDN VVDAGSETDE EDKLHIAEDD     50
    GIANPLDQET SPASMPNHES SPHMSQGLLP REEEEDEIRE SVVEHSWHSG 100
    EILQASVDGP EEMKEDYDAL GPEATIQTTI NNGTVKNANC TSDFEEYFAK 150
    RKLEERDGHA VSIEEYLQRS DTAIIYPEAP EELSRLGTPE ANGQEENDLP 200
    PGTPDAFAQL LTCPYCDRGY KRLTSLKEHI KYRHEKNEEN FSCPLCSYTF 250
    AYRTQLERHM VTHKPGTDQH QMLTQGAGNR KFKCTECGKA FKYKHHLKEH 300
    LRIHSGEKPY ECPNCKKRFS HSGSYSSHIS SKKCIGLISV NGRMRNNIKT 350
    GSSPNSVSSS PTNSAITQLR NKLENGKPLS MSEQTGLLKI KTEPLDFNDY 400
    KVLMATHGFS GTSPFMNGGL GATSPLGVHP SAQSPMQHLG VGLEAPLLGF 450
    PTMNSNLSEV QKVLQIVDNT VSRQKMDCKT EDISKLKGYH MKDPCSQPEE 500
    QGVTSPSIPA VGLPVVSHNG ATKSIIDYTL EKVNEAKACL QSLTTDSRRQ 550
    ISNIKKEKLR TLIDLVTDDK MIENHSIPTP FSCQFCKESF PGPIPLHQHE 600
    RYLCKMNEEI KAVLQPHENI VPNKAGVFVD NKALLLSSVL SEKGLTSPIN 650
    PYKDHMSVLK AYYAMNMEPN SDELLKISIA VGLPQEFVKE WFEQRKVYQY 700
    SSSRSPSLER NSKPLAPNSN PTTKDSLLPR SPVKPMDSIT SPSIAELHNS 750
    VTSCDPPLRL TKSSHFTNTK AVDKLDHSRS NTPSPLNLSS TSSKNSHSSS 800
    YTPNSFSSEE LQAEPLDLSL PKQMREPKSI IATKNKTKAT SISLDHNSVS 850
    SSSENSDEPL NLTFIKKEFS NSNNLDNKST NPVFGMNPFS AKPLYTALPP 900
    QSAFPPATFM PPVQTSIPGL RPYPGLDQMS FLPHMAYTYP TGAATFADMQ 950
    QRRKYQRKQG FQGELLDGAQ DYMSGLDDLT DSDSCLSRKK IKKTESGMYA 1000
    CDLCDKTFQK SSSLLRHKYE HTGKRPHQCQ ICKKAFKHKH HLIEHSRLHS 1050
    GEKPYQCDKC GKRFSHSGSY SQHMNHRYSY CKREAEEREA AEREAREKGH 1100
    LEPTELLMNR AYLQSITPQG YSDSEERESM PRDGESEKEH EKEGEEGYGK 1150
    LRRRDGDEEE EEEEEESENK SMDTDPETIR DEEETGDHSM DDSSEDGKME 1200
    TKSDHEEDNM EDGME 1215
    Length:1,215
    Mass (Da):136,498
    Last modified:October 11, 2005 - v1
    Checksum:iC18AFA412EF4C506
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM084708 mRNA. Translation: CAJ29798.1.
    RefSeqiNP_001028873.1. NM_001033701.1.
    UniGeneiRn.59710.

    Genome annotation databases

    GeneIDi311071.
    KEGGirno:311071.
    UCSCiRGD:1307272. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AM084708 mRNA. Translation: CAJ29798.1 .
    RefSeqi NP_001028873.1. NM_001033701.1.
    UniGenei Rn.59710.

    3D structure databases

    ProteinModelPortali Q3T921.
    SMRi Q3T921. Positions 648-705.
    ModBasei Search...

    Protein-protein interaction databases

    STRINGi 10116.ENSRNOP00000006350.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 311071.
    KEGGi rno:311071.
    UCSCi RGD:1307272. rat.

    Organism-specific databases

    CTDi 9839.
    RGDi 1307272. Zeb2.

    Phylogenomic databases

    eggNOGi COG5048.
    HOGENOMi HOG000264256.
    HOVERGENi HBG004697.
    InParanoidi Q3T921.
    KOi K09299.
    PhylomeDBi Q3T921.

    Miscellaneous databases

    NextBioi 662952.

    Gene expression databases

    Genevestigatori Q3T921.

    Family and domain databases

    Gene3Di 3.30.160.60. 5 hits.
    InterProi IPR008598. Di19_Zn_binding.
    IPR001356. Homeobox_dom.
    IPR009057. Homeodomain-like.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    Pfami PF05605. zf-Di19. 1 hit.
    [Graphical view ]
    SMARTi SM00389. HOX. 1 hit.
    SM00355. ZnF_C2H2. 8 hits.
    [Graphical view ]
    SUPFAMi SSF46689. SSF46689. 1 hit.
    PROSITEi PS00028. ZINC_FINGER_C2H2_1. 5 hits.
    PS50157. ZINC_FINGER_C2H2_2. 6 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Role of Zfhx1b in rat development."
      Carter D.A.
      Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: Sprague DawleyImported.
      Tissue: RetinaImported.

    Entry informationi

    Entry nameiQ3T921_RAT
    AccessioniPrimary (citable) accession number: Q3T921
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 11, 2005
    Last sequence update: October 11, 2005
    Last modified: July 9, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

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